SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19124

Length: 1414 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19124

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene956	61/72
SustainPine v2.0	sp_v2.0_unigene78908	6/72

Source	Descriptions	Term	Type	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	beta-xylosidase alpha-l-arabinofuranosidase 2-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	78%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		78%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		78%
Blast2go	Metabolic pathways	01100		78%
Blast2go	Alpha-N-arabinofuranosidase.	EC:3.2.1.55	-	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	78%
Blast2go	Beta-glucosidase.	EC:3.2.1.21	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Cyanoamino acid metabolism	00460	78%
Blast2go	Starch and sucrose metabolism	00500	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	78%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	78%
Blast2go	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	78%
Blast2go	beta-glucosidase activity	GO:0008422	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	cell wall	GO:0005618	Cellular Component	78%
Blast2go	proteinaceous extracellular matrix	GO:0005578	Cellular Component	78%
Blast2go	apoplast	GO:0048046	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 43 aas, putative chimeric sequence, W2: There is no M at the beginning,

Fln protein: RRDLGCHSSGPNANVVVTLSVTAGVPCKYTTPLQGLSAYTTTVYAAGCANVLCSGNNLLGAAVQTAGNADATVLIVGGDQTLEQESLDRMDLLLPGQQQQLISQVAAASKGPVILVIMSGGPFDISFAKDNNKISGILWVGYPGQAGGAAIADVIFGAYNPGGRLPVTWYPQDFAAKIPMTNMNMRPDPATGYPGRTYRFYTGKTVYMFGDGLSYTNFKHTLVHAPKLISLPMDGKHSCSHKSSNSCEAIRVTHTKCQNFFLEVHVEVSNVRRDLGCHSCLVFILLTPIQAPCPKEAIARIQKAPSPSRSHGKSPFHS*

Protein Length: 320

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGGCCCCAATGCAAATGTCGTCGTGACCTTGTCTGTCACTGCTGGCGTTCCGTGCAAGTACACCACCCCCCTCCAGGGCCTTTCAGCGTACACTACAACTGTCTACGCCGCTGGGTGTGCAAACGTTTTATGCAGTGGAAACAATTTGTTAGGTGCGGCGGTCCAGACAGCAGGAAATGCAGATGCAACAGTGTTGATAGTAGGTGGAGACCAAACATTGGAGCAAGAGAGCTTAGACAGAATGGATTTGCTGTTACCTGGCCAGCAACAGCAGCTCATATCCCAAGTTGCCGCAGCATCCAAGGGACCTGTAATTCTCGTGATCATGTCTGGGGGTCCTTTTGATATATCCTTTGCAAAGGATAATAACAAGATCTCAGGTATTCTTTGGGTGGGCTATCCGGGACAAGCTGGGGGAGCAGCCATTGCAGATGTGATATTTGGAGCATATAATCCAGGTGGGAGATTGCCTGTAACCTGGTACCCGCAGGATTTTGCTGCAAAAATCCCCATGACTAACATGAACATGAGGCCGGATCCTGCCACAGGTTACCCTGGCCGGACTTACAGATTCTACACTGGAAAAACTGTTTACATGTTCGGTGATGGCCTGAGCTATACAAACTTCAAGCACACATTAGTCCATGCGCCCAAGCTGATCTCTCTTCCCATGGATGGAAAACACAGCTGTTCTCACAAATCGTCAAATTCTTGTGAGGCTATCAGAGTAACCCACACCAAATGCCAAAACTTTTTCCTGGAAGTCCATGTTGAAGTGAGTAATGTTCGTCGTGACCTTGGCTGTCACTCATGTCTTGTTTTTATTCTCCTCACCCCCATCCAAGCACCATGCCCCAAAGAAGCAATTGCTCGGATTCAGAAAGCTCCATCTCCAAGCAGGAGCCATGGAAAAAGTCCATTTCACTCTTAA___TGTATGCAAGGATCTCAGCATTGTTGATAAGACTGGCACCAGGAAGTTGCCAGTGGGTTCTCATCTTCTTCATATTGGTGATCTCCAACACTCTGTTTCTCTACAAATAAGCAGTTGATTCCCACTCAATGGAAATCTGGCTGTATGCTTCCCCAAGGAGCAGCGGGGCAGCTCTGATAATTTTTCCCTCATAACTGGAATAAATTATTGTTTACTGTGTCCCCATATCAGAAATTGTTGTCAACAACTGCAGGCAGTCTCTTTTATATTGCCAGTAGTACTATAGATTCATGATGTTCTTTTTGCTAAGAGGCTCTGAATTGATCATAATAGCCTCTTTGGCTCACAAGTAAATTGATTGTTCACTATTATTGCCTTCCCCAAAGCAATTGCCATTGTGCAGATTCAGGGTATGTAAGAAGCTGATTGCTTTTCTAATGAAATATTGTTCATCAAT

Fln Alignment:

Contig19124___LLGAAVQTAGNADATVLIVGGDQTLEQESLDRMDLLLPGQQQQLISQVAAASKGPVILVIMSGGPFDISFAKDNNKISGILWVGYPGQAGGAAIADVIFGAYNPGGRLPVTWYPQDFAAKIPMTNMNMRPDPATGYPGRTYRFYTGKTVYMFGDGLSYT----NFKHTLVHAPKLISLPMDGXXXXXXXXXXXXEAIRVTHTKCQNFFLEVHVEVSNVRRDLGCHSCLVF
D5ABI5________________MFGEAVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDF-VKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDL-NVTMEHFEALGNRGKGH---VRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLY

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
237	75	25			0.996473
239	75			25	0.996473
241		75	25		0.996473
242	75			25	0.996473
243	75		25		0.996473
246	75	25			0.996473
252	75			25	0.996473
258	75			25	0.996473
259		25	75		0.996473
327	75			25	0.996473
350		16		83	0.994512
358	83		16		0.994512
359		16		83	0.994512
491		10	90		0.90298
495			90	10	0.90298
498		10	90		0.90298
499	90	10			0.90298
503		90	10		0.90298
508	90	10			0.90298
509	88		11		0.923564
510		88		11	0.923564
511		87		12	0.992554
512		12		87	0.992554
513	12		87		0.992554
561	83		16		0.994512
564	83			16	0.994512
566	16		83		0.994512
570			83	16	0.994512
571	83			16	0.994512
572			16	83	0.994512
573		83	16		0.994512
577		83		16	0.994512
581	83	16			0.994512
582	16		83		0.994512
963			14	85	0.999981
965	85	14			0.999981
966	85		14		0.999981
972		14	85		0.999981
974	85			14	0.999981
975	85			14	0.999981
978	85	14			0.999981
980		85	14		0.999981
984			85	14	0.999981
1032			12	87	0.999964
1035			13	86	0.999973
1037		86	13		0.999973
1039		13		86	0.999973
1040	86	13			0.999973
1050	11			88	0.999952
1052		76		23	1.0
1053	76	17	5		1.0
1056	81	12		6	0.999943
1057	12	81	6		0.999943
1296	41			58	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain