SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19066

Length: 1168 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19066

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23128	34/42
SustainPine v2.0	sp_v2.0_unigene26427	3/42
SustainPine v2.0	sp_v2.0_unigene80486	3/42

Source	Descriptions	Term	Type	Identity
AutoFact	carboxypeptidase D [Arabidopsis thaliana] sp\|Q1PF08.1\|SCP22_ARATH RecName: Full=Serine carboxypeptidase-like 22; Flags: Precursor gb\|ABE65856.1\| serine carboxypeptidase S10 family protein [Arabidopsis thaliana] gb\|ABG82026.1\| serine carboxypeptidase [Arab	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	carboxypeptidase d	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	69%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	69%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	69%
Blast2go	extracellular space	GO:0005615	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK48

Fln msg: Distance to subject end: 105 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 347 - 479

Fln protein: MWTSLWMLTLLLLSVPHVSRSDQAADKITSLPGQPPVSFDQYAGYVTVNQTDGRALFYWLTEANRQDSSKLPLVLLLSGGPGCSSIAYAASEEVGPFRIHKSASSLYLNHYSWNKYANLLFLESPVGVGFSYTNTSTNLLDNGDNRTAEDSLAFLINWFQRFPQYKYREFYIWGESYAGHYVPQLAKKVYEYNKGNPNRFINLKGFMVGNPLMNDYYDNIGRIQYWWSHALISDATYKNIMNNCNFKQLNFSTACTNYLNNAATETGNIDPYDIYAPVCSQPLVGGRFARSTESSPGSTAGYDPCIENYAEIYYNRPDVQAALHANTTHIPYSWTGCSATVFNSWTD

Protein Length: 348

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATCTATCGTTCGCATTCTAAAAAGTTTTTGATTTTCAGGGATCCATTGCAGAATCGCTTCTGTTTGTAAGCCCCGGTACCCAATTCTGATCAAATAGCG_-_ATGTGGACCTCGTTATGGATGCTGACGCTTTTGCTACTTTCGGTGCCGCACGTGTCTAGAAGTGACCAGGCCGCAGACAAAATAACTAGTCTCCCAGGCCAGCCCCCTGTCTCATTCGATCAATACGCCGGCTATGTTACAGTCAATCAGACGGACGGCAGGGCTCTCTTCTATTGGTTAACCGAGGCCAATCGTCAAGATTCTTCGAAGCTGCCTCTGGTATTGTTGCTTAGTGGAGGTCCAGGATGCTCTTCAATAGCATATGCAGCCTCAGAGGAAGTAGGACCTTTCCGGATTCATAAAAGCGCTTCTTCACTGTATTTAAATCATTATTCTTGGAACAAATATGCAAACTTGCTTTTTCTGGAATCTCCTGTTGGAGTGGGATTCTCATACACAAATACCTCCACCAACTTGTTGGATAATGGGGACAACCGTACTGCTGAGGATTCGTTGGCCTTTCTTATCAACTGGTTCCAGAGATTCCCTCAATACAAGTATCGAGAATTTTACATATGGGGGGAGAGCTACGCAGGGCACTATGTTCCGCAGCTAGCGAAGAAAGTCTATGAATACAACAAAGGGAATCCTAATCGCTTCATAAATCTCAAGGGCTTTATGGTGGGAAATCCACTGATGAACGATTACTATGACAACATTGGCCGTATTCAGTACTGGTGGTCTCATGCTTTGATATCGGATGCTACTTATAAAAACATTATGAACAACTGCAATTTTAAGCAACTGAATTTTTCAACGGCCTGTACTAATTACCTTAACAATGCCGCTACTGAAACGGGTAACATAGATCCCTATGATATTTATGCCCCAGTATGCTCGCAACCCTTAGTGGGTGGGAGGTTCGCCAGATCGACAGAATCGTCCCCGGGAAGCACAGCTGGCTACGATCCTTGCATTGAAAACTATGCAGAGATATATTATAATCGCCCTGATGTGCAGGCGGCACTTCATGCTAATACTACGCATATTCCCTACAGCTGGACTGGCTGCAGCGCAACCGTTTTCAATTCCTGGACGGATTC

Fln Alignment:

Contig19066___QAADKITSLPGQPPVSFDQYAGYVTVNQTDGRALFYWLTEANRQDXXXXXXXXXXXXXXXXXXIAYAASEEVGPFRIHKSASSLYLNHYSWNKYANLLFLESPVGVGFSYTNTSTNLLDNGDNRTAEDSLAFLINWFQRFPQYKYREFYIWGESYAGHYVPQLAKKVYEYNKGNPNRF--INLKGFMVGNPLMNDYYDNIGRIQYWWSHALISDATYKNIMNNCNFKQLNFSTACTNYLNNAATETGNIDPYDIYAPVCSQPLVGGRFARS--TESSPGST--------AGYDPCIENYAEIYYNRPDVQAALHANTTHIPYSWTGCSATVFNSWTD
B8LK48________________QQADRVYNLPGQPKASFAHYAGYITVNESHGRALFYWFFEAEDKSSKKPLVLWLNGGPGCSS-VGYGAAQELGPFQVKTNGTGLSLNTYSWNKEANLLFLESPVGVGFSYTNTSSDLLELNDQFTAEDSYEFLLRWFKRFPQYKTHDFYIGGESYAGHYVPQLAELVYDRSQ-NKSKYPSINFKGFIVGNPETDEFHDWQGIVDYAWTHAIISDQKYNLIKSICNFKLFNWTDDCTQAVSSVFADYSEIDIYNIYAPRCLENSNSGVRTRDKLTDSKNKVSRRTLGFLYGGYDPCFEVYTNEYFNRPDVQEALHANVTKIPFKWGACNNSVFETYID

SNPs (tot: 80)

Position	A %	C %	G %	T %	Probability
60		25		75	0.996473
61			25	75	0.996473
66			75	25	0.996473
72	75			25	0.996473
74			25	75	0.996473
77	75			25	0.996473
79	75			25	0.996473
80	75	25			0.996473
81	25			75	0.996473
83			75	25	0.996473
175			75	25	0.996473
185	80	20			0.995493
187	80			20	0.995493
188	80	20			0.995493
196	80			20	0.995493
200		80		20	0.995493
202		60		20	0.99255
203	80			20	0.995493
204		20	80		0.995493
207	75			25	0.996473
208	75	25			0.996473
284	25	75			0.996473
295		75		25	0.996473
317		75	25		0.996473
349		25	75		0.996473
356			25	75	0.996473
372	50		50		1.0
395		66	33		0.997452
401		66		33	0.997452
402	33	33	33		0.997753
404	66	33			0.997452
424	87	12			0.992554
425			12	87	0.992554
428	87		12		0.992554
430	25		12		1.0
432	87	12			0.992554
433	87	12			0.992554
434	62			12	1.0
435	12		75	12	0.975346
436		87	12		0.992554
449	10			90	0.90298
450	90	10			0.90298
451		11		88	0.923564
454	88		11		0.923564
455	88		11		0.923564
456	88	11			0.923564
459	77	11	11		0.968132
460			11	88	0.923564
461		11		88	0.923564
463		21		78	1.0
467	6			81	0.999943
481	87			12	0.999964
486		12		87	0.999964
487	12		81	6	0.999943
568		12		87	0.999964
620		88	11		0.999937
649		21	78		1.0
662	14		85		0.999981
715	18		81		0.999994
719		81		18	0.999994
726		18	81		0.999994
733	81		18		0.999994
788	90		10		0.90298
791			90	10	0.90298
794	10	90			0.90298
833	20		80		0.995493
844	80			20	0.995493
863	80			20	0.995493
930		30	70		1.0
935	70	30			1.0
937	70			30	1.0
939	70		30		1.0
941	70	30			1.0
943		70	30		1.0
944		70		30	1.0
946	30			70	1.0
947	70	30			1.0
949		30	70		1.0
961		87		12	0.992554
1088		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain