SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19058

Length: 320 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene19058
CGTCGTGACCTTGGCTGTCACTCAATTCCATTTGATTGTAGTTTCGCAGGATTGGGGTTTAGGGTTTACTGGTAGGGTTAAGAAGTGCTCCTGCTTGTGCAGACCCTTGGGAGCATGTGATAGGCATGGGGCTGGGGGCTCTTTTCACGAACAAGCTCATTCAATGGGAAGACAAGCTGCAGGAAGATCTCGACAAGAAGCTCGCACAGGCCAAAGCAGCCAATCGGCGAAGGTTTTCCGGTCCTGATGAAGACTTGGCCACTAGCCTTTCTCAATTTCAATGGCGCAAATGATAGTTATTTCGTGGTCTCTCCTTTTTA

Ace file of the UniGene uagpf_v2_unigene19058 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16424	1/8
SustainPine v2.0	sp_v2.0_unigene23433	7/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	protein	-	-	5.4491e-24	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	5.4491e-24	75%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	5.4491e-24	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLF2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 77 - 93

Fln protein: GLLVGLRSAPACADPWEHVIGMGLGALFTNKLIQWEDKLQEDLDKKLAQAKAANRRRFSGPDEDLATSLSQFQWRK*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCATTTGATTGTAGTTTCGCAGGATTGGGGTTTAGGGTTTACTGGTAGGGTTAAGAAGTGCTCCTGCTTGTGCAGACCCTTGGGAGCATGTGATAGGCATGGGGCTGGGGGCTCTTTTCACGAACAAGCTCATTCAATGGGAAGACAAGCTGCAGGAAGATCTCGACAAGAAGCTCGCACAGGCCAAAGCAGCCAATCGGCGAAGGTTTTCCGGTCCTGATGAAGACTTGGCCACTAGCCTTTCTCAATTTCAATGGCGCAAATGA___TAGTTATTTCGTGGTCTCTCCTTTTTA

Fln Alignment:

Contig19058___GLRSAPACADPWEHVIGMGLGALFTNKLIQWEDKLQEXXXXXXXXXXXANRRRFSGPDEDLATSLSQFQWRK
A9NLF2________________GMRKLPLMRHPWEHVIGMGLGALFTNQLIQWEAKLQEDLDKKLGEAKAANRRRLSGSDEDLATGLSRFQWRK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
185		87		12	0.992554
186		87	12		0.992554
190		88		11	0.923564
191		88	11		0.923564
192	11	88			0.923564
199	11			88	0.923564
206		11		88	0.923564
297		14		14	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain