SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19055

Length: 1731 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19055

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16254	138/151
SustainPine v2.0	sp_v2.0_unigene21298	1/151
SustainPine v2.0	sp_v2.0_unigene61662	3/151
SustainPine v2.0	sp_v2.0_unigene77038	2/151
SustainPine v2.0	sp_v2.0_unigene80929	2/151

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Eukaryotic translation initiation factor 2 subunit beta; Short=eIF-2-beta; AltName: Full=P38 gb\|AAB65774.1\| eIF-2 beta subunit [Triticum aestivum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	eukaryotic translation initiation factor 2 subunit beta-like	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF2/IF5	IPR002735	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNG0

Fln msg:

Fln protein: MADDEAPPELKEEVTELAPFDPTKKKKKKKVLVQDAADEATEKVTEKMENLSVTDGIDSAFTGMRRKKKKPVEGSFQDDDNVDSTEDAIDNFGAEDGEGEGIILQARYPWDGTDRDYKYEELLDRVFNILRENNPELAGEKRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVICNGCKSPDTILSKENRLFFLRCEQCGCSRSVAPIKAGFVARVARRKTGT*

Protein Length: 273

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGAAATGCGTCGTGACCTTGGCTGTCACTCAAGTTTTTAGCTTTCGAATGAAGGCTTAAACCATCGATTCTTTAACTCATCTACATAGCCCTCCAATCATCTCCATAGTCGGAGCTCCGAGTTACCGATTTCATGATTTAAGAGACTTCATATAGGTTCCTCCATTTGAACTTGAGAGAAATAGGTTCCACATCAACCGAGCAAATAAGCCAGATCGCAGTCCACACAGCACAAGCTTTTTTTTGAAGGCGAGGATTCCCAATTTTTTCACTCGTTCCTCTATTCTCTACATTTCTTCGCAAGTTGGGGTTGAAGGAAGATATCATCCATCTGCCTGAATCTGTCTGTGAAG_-_ATGGCCGACGATGAAGCTCCACCGGAATTGAAAGAAGAAGTCACCGAGCTTGCTCCATTTGATCCTACCAAGAAAAAGAAGAAGAAGAAAGTTTTGGTGCAAGATGCCGCAGACGAAGCAACAGAGAAAGTGACTGAGAAGATGGAAAATCTTTCAGTTACTGATGGTATTGACTCTGCATTCACTGGGATGAGGAGAAAGAAGAAGAAGCCTGTGGAAGGCAGTTTTCAAGATGATGATAATGTTGATAGCACAGAAGATGCTATTGATAATTTTGGGGCTGAGGATGGAGAAGGGGAGGGTATTATTTTGCAAGCTCGATATCCCTGGGACGGAACTGATCGTGATTACAAATATGAAGAGCTGCTTGACAGAGTGTTCAATATTTTGCGTGAGAACAATCCAGAACTTGCTGGTGAAAAGCGTAGAACTGTTATGAGGCCACCTCAAGTCCTTCGTGAGGGGACCAAAAAGACTGTATTTGTCAATTTTATGGATCTCTGCAAAACGATGCACAGACAGCCAGAACATGTGATGACATTCTTGCTTGCAGAAATGGGAACAAGCGGTTCTCTTGACGGACAACAACGGTTGGTTATTAAGGGAAGATTCGCCCCTAAAAATTTTGAGGGTATTTTAAGAAGATATATCAATGAGTATGTGATATGCAATGGTTGTAAGAGTCCAGATACTATCCTTTCAAAGGAGAATCGGCTTTTCTTCCTTCGTTGTGAACAGTGTGGATGTTCACGCTCTGTGGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGCACGCCGTAAAACTGGCACATAA___ACCTTGAAAAGATTGTTGCAGTGTCACTATATGCACTTTATCCTTGTACCTAAATCGAGAACTGGCTTGCATTATAATTTTGAAAATCTGTCCTTGGTAATTGTTTGCATTAGAATTTGGTACTTCTGCATGTTCTTTTATAGCAGTTCAATTGAGTTAAAAAGAATTCTAAGTGGTAATTTTCCATTGAATGTTGAGAAAATGTAAAAAGAATAATCTTTTGGGGAAAGCAGTGGAGTTTCTTGAAAGTTTTGGATGAATTCATATTTTTCATTAATGCGGTTGTTTACCTAACAAAGCCTGTGTGTGAAAAACTCAGTTAAACAGTTAGTATGCTTTTCCACATGATACTAGTTCATTTGTGTGGATTTTTCTGTAACGTGATAACAAGAATTATCACTGAGAACCAGTGTGACTTTAATTGAGGTGTGTGTGTAAGTTTTGCACAATGCTAGAGTGTGAAACTAGTAAGATGTTCACTGAGAACTTTCATTTTGAGGTTGCATTGGATGAAAAATCTTCACTGACAAAGTTTT

Fln Alignment:

Contig19055___MADDEAPPELKEEVTELAPFDPTXXXXXXXVLVQDAADEATEKVTEKMENLSVTDGIDSAFTGMRRKKKKPVEGSFQDDDNVDSTEDAI-DNFGAEDGEGEGIILQARYPWDGTDRDYKYEELLDRVFNILRENNPELAGEKRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVICNGCKSPDTILSKENRLFFLRCEQCGCSRSVAPIKAGFVARVARRKTGT
A9NNG0________________MVEEEAPLELKEEVTELAPFDPTKKKKKKKVLVQDAGDEATEKVTEKMENLSVTDGLDSAFTGMRRKKKKPVEGSFQDDDNLDSTEDATGDNFAAEDEEGEGIILHARYPWEGTDRDYKYEELLDRVFNILREHNPELAGEKRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVICNGCKSPDTILSKENRLFFLRCEQCGCSRSVAPIKAGFVARVARRKTGT

SNPs (tot: 106)

Position	A %	C %	G %	T %	Probability
92	88		11		0.923564
95		11	88		0.923564
96	88			11	0.923564
97			11	88	0.923564
98	11			88	0.923564
100		11		88	0.923564
103	88		11		0.923564
104	88		11		0.923564
114	88	11			0.923564
271		12		87	0.999964
274		12	87		0.999964
303		43	56		1.0
377			7	92	0.999532
390	7	92			0.999602
398		92	7		0.999602
450		88	11		0.999937
451	82		5	11	0.999919
452	82	11		5	0.999919
454	86			13	0.999973
455	80	6	13		0.999961
457	80	13		6	0.999961
458	80	13		6	0.999961
459			86	13	0.999973
460	76		7	15	0.999983
461	76	7	15		0.999983
463	69	15	7		0.999985
464	76			23	1.0
466	84	15			0.999986
468		15	76	7	0.999983
469	76	7		15	0.999983
470	84	15			0.999986
584	66	33			1.0
586	66			33	1.0
587	66	33			1.0
590	66		33		1.0
592		33	66		1.0
594		55		44	1.0
601			55	44	1.0
602	55	44			1.0
604		44	55		1.0
605			55	44	1.0
628		10		90	0.90298
631		10		90	0.90298
640	90	10			0.90298
641			90	10	0.90298
642	90			10	0.90298
643	90		10		0.90298
645	90	10			0.90298
648		90		10	0.90298
649		10		90	0.90298
651		10		90	0.90298
653		11	88		0.923564
686		18	81		0.999994
844		28		71	1.0
850			66	33	1.0
863			83	16	0.994512
906	88		11		0.923564
907			88	11	0.923564
909		88	11		0.923564
910	88			11	0.923564
913	88	11			0.923564
915	88			11	0.923564
920	88	11			0.923564
923	88			11	0.923564
987	66	33			1.0
988			88	11	0.923564
989			77	22	0.999999
990		22	66	11	0.999999
991	66	11	22		0.999999
992	77			22	0.999999
993		11	88		0.923564
994	88			11	0.923564
996	12	25		62	1.0
998		75		25	1.0
1000		75	25		1.0
1002		75		25	1.0
1003		75	25		1.0
1005	75	25			1.0
1007	75	25			1.0
1008	75			25	1.0
1009	75	25			1.0
1010	20			80	0.999996
1017			90	10	0.90298
1116		7		92	0.999664
1124		6	90	3	0.997952
1130	87	6			0.993531
1134	6	3		90	0.997544
1146	5		91	2	0.993509
1150		94		5	0.998397
1152	94		5		0.998397
1153			5	94	0.998397
1155	94		5		0.998397
1156	94			5	0.998397
1157		5	94		0.998397
1158	5		94		0.998397
1286	96		3		0.989722
1287		3		96	0.989722
1290	1	3		94	0.947029
1299	96	3			0.991825
1353		3		96	0.993037
1389		40		59	1.0
1453		25	75		1.0
1482	56		43		1.0
1511		69		30	1.0
1597	23		76		1.0
1624		83		16	0.999991

SSRs (tot: 2)

Start position	End position	Sequence	Length
455	468	AAG AAG AAG AAG AA	14
578	589	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain