SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19053

Length: 2635 nt

UniGene Fasta

>uagpf_v2_unigene19053
CGTCGTGACCTTGGCTGTCACTCAACGCCACGTGACCTTGTCTGTCACTCGTTTAGCATCATCTTTGAAACTCTAATTATAGTAGGACATTTCCATTTTAATGCGATTTGAGGTTAATCTACCTTAGTCTCTTTTGAATGTTGTCGGATCAAATCAGTCATTTGTGCAGGAAATGAAGATTTGAGTTCTCCGGAAACACATTAAGGATATCGTAGCTCTTTGAACATGGGAAAGAAAATTTTGCAATGTTTGCGGTTAATTATTGCTATATTGACGGCGACTATTACGATATCGCACGGAACTACGGATCCAGACGACGTTTCTGCGCTCAAAGGCATATATAGCAGTCTAAATTCTCCCCAGCAACTTTCTGGATGGAGTGCAAATGGAGGAGATCCATGTGGTCAGTCCTGGAAAGGGGTTTCATGTTCTGGATCATCAGTTACATCAATCAAGCTCTCAGGCTTAGGATTGTCAGGATCATTGTATTACCAACTTTCAGACCTTTCATCATTGACAACCTTGGATTTGAGCAACAACAACATTCAGGGCAACATTCCTTATGCACTTCCACAGAAACTCCAGGAGTTAAACCTTGCTAGCAATGGCCTCAGTGGTACTATACCGTATTCAATTTCGAACATGACTGGCCTCACAGATTTGAAGTTGAGTCACAATCAACTTTCAGGTCAGATCCAAGATATATTTGGACAGCTTTCCAGCCTCTCTACTCTGGATCTATCCTTCAATACTTTGACTCAAAATCTGCCGCAGAGTTTCAGCTCATTGTCGAGTCTCAGTGTGCTATATTTGCAAAATAATCAGCTTACTGGTTCTGTTAATGTTCTTGCCAATCTGCCACTCACAGATTTGAATATTGAAAATAACCGTTTTAGTGGTTGGGTACCCAATCCCTGGAGGTCCAACCAAAACTTTAAATATAGCAGTGGTAATAGTTTCGCCACTGGTCCTGCTCCTCCTCCCCCACCATATACTCCACCTCCACCTTCTAACAATCGGCCACCCAAGTCCTCAAATGTGGTCCCTTCATCAGGTGGCTCAAAGGGTGGGAACAGCAATAAGAAATCTCTGAGTGGTGGTGCCATAGCGGGCATAATATTTGCAGTTATTTTGACTGTTGTTGCTGCTATATTAGGAGTTATTTTATATGCACGTAAGTCTCCTAGAAGAGAGCAGGATGAAGAAAAACTAAGCAATCGCGTGTCTTTCACCCCCCTATCTCCCCTCGATGCTTGAATTATTGAAAGAGAGTCCAGAGCAAAAAGTCAGCTCATCACCTCCTGAAATCACTCTTAAGCCTCCCCCCTCTGAACGCAACAAGTCTACAGGGGACAAAGGCTTCGGAAGTATTTTTTCAAGTAAGAGGACTAAAAACCCAATATCAGCAACTGAATATTCTATTGCAGACCTGCAAATGGCAACAAATAGTTTTAGTCAAGATAATCTTATTGCGGAGGGTGCTCTTGGACGAATCTACCGAGCAGAGTTTCCAGATGGAAAGATTTTGGCAGTGAAAAAATTGGACACTTCTACGCTGTCCCTACAAAGGCCTGAAGACTTCCTGGACGCAGTATCTAATATATCGCGCCTACATCATCCTAACATTACAGAACTAGTGGGTTATTGCACAGAACATGAGCAATACCTTCTTGTGTATGAATATTTCGACAATGGATCACTCTATGACGTATTGCACATGGCAGATGAGACTACTAGAAATTTGTCTTGGAACATTCGTGTAAAGATTGCGCTGGGTTCAGCTCGAGTTTTAGAGTATTTGCATGAAGTTTGCTCTCCATCTATTGTGCATAAAAAATTCAAGTCGTCTAATATTTTGCTTGATGATGATTTCAACCCTCGTCTGTCCGACTGTGGAATTGCTGCCCTCAATCCAAATTCTGAGCGTCAGGTTCAGGTGCTGGGTTCATTTGGGTACAGTGCTCCTGAATATGTCATGTCAGGAATCTATACAATGAAGAGCGATGTGTATAGTTTTGGAGTGGTAATGCTTGAGCTTTTGACAGGCCGGAAGCCCTTGGATAGTTCAAGAACAAGGTCAGAACAGTCATGACGTAAGATGGGCCACCCCTCAGCTTCATGATATTGATGCATTGGCAAAGATGGTTGATCCAGCTTTGAAGGGAAGTTATCCTGCAAAATCTCTCTCGCGCTTTGCTGATATTATTGCCCTCTGCATTCAGCCTGAACCAGAATTCCGTCCTCCAATGTCTGAAGTGGTGCAAGCATTGGTTCGTATGATGCAACGGGCTAGCCTCAACAAGAGGATGACAGGAGATGAAACTGCAGACCACGATCCTGTAGATTATTAAATACAGTGATATTGCCTTGGTGGTACTCTTTAAGAAAATATTTAATTCTAAAAAGCTCGTACCGCCTTCTTTGGACTTTCCAAAACAGTTGAAGAGTTGATAACTTCATTATTTAGCTCCTAAGGCCTTCGTTGGACTTCCACAACAGTTGAAAGAGTTGATAGCATCATTATTTTCATAAATTGAATCTGTTCAAGATATTTTATAGTCCACGTTGTGGTGAAAACAGTGTAATTGAAATATTAATAAAATATTAACACTTGGTTTGCTCATTGTGTTTTAAC

Ace file of the UniGene uagpf_v2_unigene19053

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10855	159/224
SustainPine v2.0	sp_v2.0_unigene63542	49/224
SustainPine v2.0	sp_v2.0_unigene65743	2/224
SustainPine v2.0	sp_v2.0_unigene79639	5/224

Source	Descriptions	Term	Type	Identity
AutoFact	ovule receptor-like kinase 28 [Solanum chacoense]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein strubbelig-receptor family 8-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKU4

Fln msg: Overlapping hits, possible frame ERROR between 2089 and 2073,

Fln protein: MLELLKESPEQKVSSSPPEITLKPPPSERNKSTGDKGFGSIFSSKRTKNPISATEYSIADLQMATNSFSQDNLIAEGALGRIYRAEFPDGKILAVKKLDTSTLSLQRPEDFLDAVSNISRLHHPNITELVGYCTEHEQYLLVYEYFDNGSLYDVLHMADETTRNLSWNIRVKIALGSARVLEYLHEVCSPSIVHKKFKSSNILLDDDFNPRLSDCGIAALNPNSERQVQVLGSFGYSAPEYVMSGIYTMKSDVYSFGVVMLELLTGRKPLDSSRxxxxxxxDVRWATPQLHDIDALAKMVDPALKGSYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQALVRMMQRASLNKRMTGDETADHDPVDY*

Protein Length: 369

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGCCACGTGACCTTGTCTGTCACTCGTTTAGCATCATCTTTGAAACTCTAATTATAGTAGGACATTTCCATTTTAATGCGATTTGAGGTTAATCTACCTTAGTCTCTTTTGAATGTTGTCGGATCAAATCAGTCATTTGTGCAGGAAATGAAGATTTGAGTTCTCCGGAAACACATTAAGGATATCGTAGCTCTTTGAACATGGGAAAGAAAATTTTGCAATGTTTGCGGTTAATTATTGCTATATTGACGGCGACTATTACGATATCGCACGGAACTACGGATCCAGACGACGTTTCTGCGCTCAAAGGCATATATAGCAGTCTAAATTCTCCCCAGCAACTTTCTGGATGGAGTGCAAATGGAGGAGATCCATGTGGTCAGTCCTGGAAAGGGGTTTCATGTTCTGGATCATCAGTTACATCAATCAAGCTCTCAGGCTTAGGATTGTCAGGATCATTGTATTACCAACTTTCAGACCTTTCATCATTGACAACCTTGGATTTGAGCAACAACAACATTCAGGGCAACATTCCTTATGCACTTCCACAGAAACTCCAGGAGTTAAACCTTGCTAGCAATGGCCTCAGTGGTACTATACCGTATTCAATTTCGAACATGACTGGCCTCACAGATTTGAAGTTGAGTCACAATCAACTTTCAGGTCAGATCCAAGATATATTTGGACAGCTTTCCAGCCTCTCTACTCTGGATCTATCCTTCAATACTTTGACTCAAAATCTGCCGCAGAGTTTCAGCTCATTGTCGAGTCTCAGTGTGCTATATTTGCAAAATAATCAGCTTACTGGTTCTGTTAATGTTCTTGCCAATCTGCCACTCACAGATTTGAATATTGAAAATAACCGTTTTAGTGGTTGGGTACCCAATCCCTGGAGGTCCAACCAAAACTTTAAATATAGCAGTGGTAATAGTTTCGCCACTGGTCCTGCTCCTCCTCCCCCACCATATACTCCACCTCCACCTTCTAACAATCGGCCACCCAAGTCCTCAAATGTGGTCCCTTCATCAGGTGGCTCAAAGGGTGGGAACAGCAATAAGAAATCTCTGAGTGGTGGTGCCATAGCGGGCATAATATTTGCAGTTATTTTGACTGTTGTTGCTGCTATATTAGGAGTTATTTTATATGCACGTAAGTCTCCTAGAAGAGAGCAGGATGAAGAAAAACTAAGCAATCGCGTGTCTTTCACCCCCCTATCTCCCCTCG_-_ATGCTTGAATTATTGAAAGAGAGTCCAGAGCAAAAAGTCAGCTCATCACCTCCTGAAATCACTCTTAAGCCTCCCCCCTCTGAACGCAACAAGTCTACAGGGGACAAAGGCTTCGGAAGTATTTTTTCAAGTAAGAGGACTAAAAACCCAATATCAGCAACTGAATATTCTATTGCAGACCTGCAAATGGCAACAAATAGTTTTAGTCAAGATAATCTTATTGCGGAGGGTGCTCTTGGACGAATCTACCGAGCAGAGTTTCCAGATGGAAAGATTTTGGCAGTGAAAAAATTGGACACTTCTACGCTGTCCCTACAAAGGCCTGAAGACTTCCTGGACGCAGTATCTAATATATCGCGCCTACATCATCCTAACATTACAGAACTAGTGGGTTATTGCACAGAACATGAGCAATACCTTCTTGTGTATGAATATTTCGACAATGGATCACTCTATGACGTATTGCACATGGCAGATGAGACTACTAGAAATTTGTCTTGGAACATTCGTGTAAAGATTGCGCTGGGTTCAGCTCGAGTTTTAGAGTATTTGCATGAAGTTTGCTCTCCATCTATTGTGCATAAAAAATTCAAGTCGTCTAATATTTTGCTTGATGATGATTTCAACCCTCGTCTGTCCGACTGTGGAATTGCTGCCCTCAATCCAAATTCTGAGCGTCAGGTTCAGGTGCTGGGTTCATTTGGGTACAGTGCTCCTGAATATGTCATGTCAGGAATCTATACAATGAAGAGCGATGTGTATAGTTTTGGAGTGGTAATGCTTGAGCTTTTGACAGGCCGGAAGCCCTTGGATAGTTCAAGAxxxxxxxxxxxxxxxxxxxxxGACGTAAGATGGGCCACCCCTCAGCTTCATGATATTGATGCATTGGCAAAGATGGTTGATCCAGCTTTGAAGGGAAGTTATCCTGCAAAATCTCTCTCGCGCTTTGCTGATATTATTGCCCTCTGCATTCAGCCTGAACCAGAATTCCGTCCTCCAATGTCTGAAGTGGTGCAAGCATTGGTTCGTATGATGCAACGGGCTAGCCTCAACAAGAGGATGACAGGAGATGAAACTGCAGACCACGATCCTGTAGATTATTAA___ATACAGTGATATTGCCTTGGTGGTACTCTTTAAGAAAATATTTAATTCTAAAAAGCTCGTACCGCCTTCTTTGGACTTTCCAAAACAGTTGAAGAGTTGATAACTTCATTATTTAGCTCCTAAGGCCTTCGTTGGACTTCCACAACAGTTGAAAGAGTTGATAGCATCATTATTTTCATAAATTGAATCTGTTCAAGATATTTTATAGTCCACGTTGTGGTGAAAACAGTGTAATTGAAATATTAATAAAATATTAACACTTGGTTTGCTCATTGTGTTTTAAC

Fln Alignment:

Contig19053___PISATEYSIADLQMATNSFSQDNLIAEGALGRIYRAEFPDGKILAVKKLDTSTLSLQRPE---DFLDAVSNISRLHHPNITELVGYCTEHEQYLLVYEYFDNGSLYDVLH-----MADETTRNLSWNIRVKIALGSARVLEYLHEVCSPSIVHKKFKSSNILLDDDFNPRLSDCGIAALNPNSERQV---QVLGSFGYSAPEYVMSGIYTMKSDVYSFGVVMLELLTGRKPLDSSRTxxxxxHDVRWATPQLHDIDALAKMVDPALKGSYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQAL
B8LKU4________________PIEAPSLSLDELKEATDNFGPKALIGEGSYGRVYYATLSDGQPAAIKKLDVSN----QPEANAEFLAQVSMVSRLKHDHIVELVGYCVEGTLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVKIAVGAAKGLEYLHEKAQPHIIHRDIRSSNVLLFDDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPxxxxxL-VTWATPRLSE-DKVKQCVDPKLKGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKAL

SNPs (tot: 166)

Position	A %	C %	G %	T %	Probability
30		50	50		1.0
31	50			50	1.0
42			50	50	1.0
52	50		50		1.0
82	83	16			0.994512
85	83	16			0.994512
90	83	16			0.994512
93			16	83	0.994512
94		83	16		0.994512
98		14		85	0.993533
99			28	71	1.0
101	71	28			1.0
102	85		14		0.993533
104		14	85		0.993533
105	28	71			1.0
106		14	85		0.993533
107	85	14			0.993533
110			14	85	0.993533
112	85	14			0.993533
113			85	14	0.993533
116		14		85	0.993533
118	85	14			0.993533
124	14	85			0.993533
125	14			85	0.993533
126	14			85	0.993533
129	14			85	0.993533
132	14		14		0.984337
134	14			85	0.993533
140	85			14	0.993533
142	14		85		0.993533
145			85	14	0.993533
148			85	14	0.993533
149			85	14	0.993533
150	85			14	0.993533
151	14			14	0.984337
154	85			14	0.993533
155	85	14			0.993533
156	85	14			0.993533
330	7		92		0.999664
349	89	10			1.0
355	88	11			1.0
356	88	11			1.0
361		88	7	3	0.999079
362		92		7	0.999664
364	7	92			0.999664
365	88	7		3	0.999079
366		3	88	7	0.999079
422			90	9	0.999842
423		9	90		0.999842
465	93			6	0.999999
467	4		95		0.99692
469		4		95	0.99692
471	95			4	0.99692
475		4		95	0.99692
481		4	95		0.997494
482	4		95		0.997494
488		12		87	1.0
491	86		13		1.0
493		2	13	83	1.0
495	7	92			0.999999
497	84		15		1.0
498	84		15		1.0
500			4	95	0.997494
501			14	85	1.0
502		4		95	0.997494
503		95	4		0.997494
504	92			4	0.98868
505		7	85		0.999991
506	82	7		7	0.999984
507		92		7	0.999999
508	7	92			1.0
509	10			89	1.0
511			5	94	0.997984
512		94	5		0.997984
513	92	5			0.991359
517		5		94	0.9982
563		94	5		0.998397
566	94		5		0.998397
714	97			2	0.974293
776	96			3	0.983282
782			3	96	0.983282
784	96			3	0.983282
792		3	96		0.983282
826		90		9	1.0
827	87		12		1.0
828		1	94	3	0.947029
831		9	3	87	1.0
835		7	90	1	1.0
836	7		92		1.0
960		11		88	0.999952
961		5	11	82	0.999919
965	5	82		11	0.999919
966		88	11		0.999952
970			88	11	0.999952
972			11	88	0.999952
974		88	11		0.999952
976	11		82	5	0.999919
980	11	88			0.999952
1200			90	10	0.90298
1201		10	90		0.90298
1237	11	88			0.923564
1252			88	11	0.923564
1253	88			11	0.923564
1254		11		88	0.923564
1531		22	77		0.999999
1533		77		22	0.999999
1534	77	22			0.999999
1540	75	25			1.0
1541	75			25	1.0
1542	75			25	1.0
1543	75		25		1.0
1544	75		25		1.0
1545		25		75	1.0
1549		25	75		1.0
1552	75			25	1.0
1674			14	85	0.993533
1677			14	85	0.993533
1680	14			85	0.993533
1681		14	85		0.993533
1682		14		85	0.993533
1683	85			14	0.993533
1686	85		14		0.993533
1687	85	14			0.993533
1689	85		14		0.993533
1691		14		85	0.993533
1694	14		85		0.993533
1857	83		16		0.994512
1860	83	16			0.994512
1861		16		83	0.994512
1864			16	83	0.994512
1872		16	83		0.994512
1875	16		83		0.994512
1936	85		14		0.993533
1937			71	14	0.984337
1939	14	14		71	0.984337
1940		14		85	0.993533
1942	85			14	0.993533
1943			85	14	0.993533
1950		14	85		0.993533
1951	14		85		0.993533
1952		14		85	0.993533
2098			20	80	0.995493
2132	76	23			1.0
2133			23	76	1.0
2135		23	76		1.0
2136	76		23		1.0
2140	76	23			1.0
2146	76			15	0.999983
2147	76		15		0.999983
2148	76			23	1.0
2149		15	84		0.999986
2195			14	85	0.999981
2196		85		14	0.999981
2198	14	85			0.999981
2199		14	85		0.999981
2203			15	84	0.999986
2256		14		85	1.0
2263	85	14			1.0
2264		9	85	4	0.999726
2266			93	6	0.99903
2271	93			6	0.999153
2272	90	3	6		0.997073
2273			90	9	1.0
2276		6		93	0.999153
2278		6	93		0.999153
2279	6		93		0.999153

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain