SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19038

Length: 1089 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19038

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15868	61/65

Source	Descriptions	Term	Type	Identity
AutoFact	Trans-2-enoyl-CoA reductase n=1 Tax=Gossypium hirsutum RepID=A9XUG8_GOSHI	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	synaptic glycoprotein sc2	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	IPR001104	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0I4

Fln msg: Separated hits, possible frame ERROR between 107 and 173, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 249 - 308

Fln protein: S*PWLSLNYFEKDEGKLVVVFKDLGPQVAYSTLFxxxxxxxxxxxxxxxxxxxxxxxGYPAERVIHPVQTYAMYYWCFHYAKRILETFFIHRFSHATSPLSNVFRNCCYYWTFGAVIAYFVNHPLYTPVSEKQMKIGFGLGIVCQLANFYCHILLRNLRSPEGKGGYQIPSGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYTFLVVATFIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL*

Protein Length: 250

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTTTGAAAAAGATGAGGGAAAGTTAGTTGTAGTGTTCAAGGATTTAGGGCCACAGGTAGCCTACAGCACTCTTTTTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGTTATCCTGCAGAAAGAGTTATACACCCAGTTCAGACATATGCAATGTACTATTGGTGCTTTCACTATGCCAAACGCATTTTAGAGACCTTTTTTATTCACAGGTTCAGCCATGCAACTTCACCACTCTCTAATGTGTTTAGAAACTGCTGTTACTACTGGACCTTTGGTGCAGTTATAGCTTATTTTGTCAACCATCCCCTCTACACCCCTGTGAGTGAGAAGCAAATGAAAATTGGGTTTGGGCTGGGGATTGTATGTCAGTTAGCAAACTTTTACTGCCATATTTTGTTGAGAAATCTTAGGAGCCCCGAAGGTAAAGGAGGATATCAAATTCCAAGTGGATTCCTGTTTAATATAGTCACATGTGCTAACTACACCACTGAGATCTATCAATGGTTGGGATTCAATATCGCAACACAGACAGTTGCTGGCTACACCTTTCTGGTTGTAGCAACCTTTATTATGACTAACTGGGCTCTTGCCAAGCACCGCCGTTTGAAGAAGTTGTTTGATGGCAAAGATGGCAGACCCAAATATCCAAGGCGATGGGTGATATTACCTCCTTTCCTATGAAAAGGATGCTTATTAATTCTGGGGACACTTTCGTTGATTTCTATACTGAATTGTCAATAAAACTTGGGCCCTTTTCTGGTTCTACAATGTCTAAAATTTGGTGGCTTTAGCATGATCGGACGTTGTAATTGACTGTTTTGTGGCTGTAATTTATTTAATTGTGCTTGCTTAAGAAGCTAGTAAGAGTGAATTTCTCACCTGGGTATGTTCCCGGTATTTCAAATGGAGTATTTTTAATTACTATTTTTGCTGTTTTTTGAAGATCTGTTCTACATGTACCATCCTGGTACTTGCTTTGCTATTTTCTCACATATAACTGCTGCTTGCATTAGTGTGATTAC

Fln Alignment:

Contig19038___NYFEKDEGKLVVVFKDLGPQVAYSTLFFxxxxxxxxxxxxxxxxxxxxxxGYPAERVIHPVQTYAMYYWCFHYAKRILETFFIHRFSHATSPLSNVFRNCCYYWTFGAVIAYFVNHPLYTPVSEKQMKIGFGLGIVCQLANFYCHILLRNLRSPEGKGGYQIPSGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYTFLVVATFIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
A9P0I4________________DYFEKDEGKLVVVFKDLGPQVAYSTLFFxxxxxxxxxxxxxxxxxxxxxxGYPAERVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLSNVFRNCCYYWTFGAVIAYFVNHPLYTPVSEKQIKIGFGLGIVCQVANFYCHILLRNLRIPGGKGGYQIPGGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYTFLAVATFIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
440		11	88		0.923564
441			11	88	0.923564
442			22	77	0.999999
443	88	11			0.923564
444		22	77		0.999999
446	66			33	1.0
447	66		33		1.0
448	77		22		0.999999
450		11		88	0.923564
451			22	77	0.999999
453		22	11	66	0.999999
454	88		11		0.923564
458		88		11	0.923564
459	22	77			0.999999
475	87		12		0.992554
485		87		12	0.992554
488		12		87	0.992554
521	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain