SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18962

Length: 966 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18962

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4804	31/58
SustainPine v2.0	sp_v2.0_unigene61492	17/58
SustainPine v2.0	sp_v2.0_unigene77192	6/58
SustainPine v2.0	sp_v2.0_unigene79157	2/58

Source	Descriptions	Term	Type	Identity
AutoFact	DUF868 domain containing protein	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3	TRASH	IPR011017	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
79		66		33	1.0
128		14		85	0.993533
136		14	85		0.993533
137	85	14			0.993533
141	85		14		0.993533
142		14		85	0.993533
143	85			14	0.993533
144	85		14		0.993533
145	85			14	0.993533
146		14	85		0.993533
151	14			85	0.993533
263	71	28			1.0
267			28	71	1.0
268	71			28	1.0
270	28		71		1.0
271		28	71		1.0
273	71			28	1.0
278	71			28	1.0
283		28		71	1.0
285		28		71	1.0
370	75		25		0.996473
507	83			16	0.994512
510	83	16			0.994512
511		16		83	0.994512
512		83		16	0.994512
513		83		16	0.994512
514	83		16		0.994512
515	83		16		0.994512
519	83	16			0.994512
520	16			83	0.994512
523	83	16			0.994512
524	16			83	0.994512
526		14		85	0.993533
527			14	85	0.993533
529		14		85	0.993533
531			85	14	0.993533
532		85	14		0.993533
535	85	14			0.993533
538			14	85	0.993533
539		85	14		0.993533
541	85			14	0.993533
542		85	14		0.993533
544		12	87		0.992554
545	12			87	0.992554
547			87	12	0.992554
556	12		87		0.992554
589			87	12	0.992554
615			10	90	0.90298
616			90	10	0.90298
618	10		90		0.90298
619		10		90	0.90298
620	90	10			0.90298
623	90		10		0.90298
624			10	90	0.90298
627		92	8		0.999718
632	8			91	0.999807
642		6		93	0.99903
828	56	43			1.0
894		42		57	1.0
952	20			60	0.99255
953	75			25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
580	592	GAT GAT GAT GAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain