SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18951

Length: 2079 nt

UniGene Fasta

>uagpf_v2_unigene18951
CGTCGTGACCTTGGCTGTCACTCAATATTGACCCCCGTATTGCCTTAGTATCGCGGCTTCCCCGGCACCCAACTCAACTGGAGATCAGGTCCACTGCGTCCCATTCTTTTACTAGTTGGCCCTTTATTCGCTACAGAACGAGGCAAGGCGAGGCGAGGCGAGGCCTGTCTTGGATTGGTCTAAAAAATGGCGTTTCCCTATTTGGAAGCTGTTGTTGGTTTCATGATCTTCATGTACTTCATTGAGACATACCTTGACTTGAGGCAACATACGTCACTTAAGCTTCCTCATCTGCCTAAGCCTTTAAAAGGAGTGGTGAGTCAGGATAAGTTTGAAAAATCTCGAGCTTACAGCATTGATAAAAGCCGCTTCCACTTTGTTCACGCAGCAGTGACCATCATAGGAGATTCAGCAATTTTACTTCTTCGAGCATTACCATTCCTTTGGCAGAAATCAGAAGTTGTAGTTGCAAACTTGGGCTTAGATCCTCATAATGAAATCATTCATACACTCGTATTTTTAGCAGCTGTTACTCTTTGGTCTCAGTTGATAGATCTGCCTTTTTCACTGTATTCAACTTTTGTCATTGAGGCTCGACATCGTGACCTTGGCTGTCACTCAGCTTTTTCTCAGAGATATGGTTGTGGGTCTGGGCCTTTCAGTTTTACTTGGGCCACCAATTGTTTCAGCAATAATCATAATTGTGCAGAAAGGAGGTCCATATTTAGCAATATACCTTTGGGCCTTCATGCTTATACTATCACTAGTGATGATGTCTTTATATCCTATTCTTATAGCTCCACTCTTCAACAAGTTCACTCCTCTTCCGGAAGGGGAGCTTAGGTCGAATATTGAAAGGCTAGCATCATCTCTAAAGTTTCCGTTGAAGAAGCTATTTGTGATTGATGGTTCAACAAGATCGACACACAGCAATGCATACATGTATGGATTTTACAAGAACAAGCGTATAGTGATATATGACACCTTGATTCAGCAGTGCAAAAATGAGGAGGAAGTTGTTGCAGTTATTGCCCATGAATTGGGCCATTGGAAGCTCAATCATACAATGTATTCCTTTATTGCCATGCAGGTGCTTACACTATTACAATTTGGTGGCTATACTCTTGTTCGGAATTCAAAAGATCTCTTTGAAAGCTTTGGTTTCCCGTCGTGACCTTGGTTGTCGGTCATTCTTATTTTCCAGCATACCATAATGCCTATTCATCATCTTGTGAGCTTTGCTCTCAATCTTGTCAGTCGAGCATTTGAGTTCCAGGCTGATGGTTTTGCAAAGAAACTTGGCTATGGTGCTCCTCTCCGAGCAGGGCTTATTAAGTTGCAGGAGGAAAATTTATCGGCTATGAATACTGATCCCTGGTATTCAGCATATCATTATTCTCACCCTCCTCTTGTAGAGAGGCTTGCAGCATTGGACAGGTCTGATGAAAAAGAGGATTAGGATTTGTTTGTGGGGTTTCATGTATATCCTTTTAATTCCTCGATATCTGCATGCATTTATATCATATCTGGGGTCCTGAATGCCTTGTTGCAGCCGATTTTGACTAATAGCAGAAAGCTGCTCGATGACCAAAATGTTGCTTCAGTAGCAACGAGGGTATATTATAGTTGGTTGTTTGAGTGGCAGATGTATAAAGTCAGCACTGCATTGCCTTTACATGTTCTGTAATAACAATGAATGTTTCAATTTTGCATGATAATAATGTTGCGTCCTATGTTTAGACATTGTTATAAAACTTAAGTTCGATGAAGTTGAAAGTTCCTCTTATTTTTCCGTGTGTGACAAATCATTTAGTAATGTTGACTTTTGAATGGTTTGGCGTTAGAAATTATAGGCGGCCAACTTTTAGCTCAAATGTAATTGAATTATATAAGGGCCTCTTATTAAAAAATAAGTTAACATGAGCGAAAGATACTAAGAAATTGAAATTTGAAGCATGCACGTGAGCTTTACTTTGAATTCTGCAATAAGGAAAATTCCAAGTGTGAAATAATCCCACTGGCACGATGATTGTAATATATAGTGTTTCCTTATCAGATCACATAACATTTTGTGCATCA

Ace file of the UniGene uagpf_v2_unigene18951

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22106	89/103
SustainPine v2.0	sp_v2.0_unigene63722	3/103
SustainPine v2.0	sp_v2.0_unigene77047	7/103

Source	Descriptions	Term	Type	Identity
AutoFact	CAAX prenyl protease 1-like protein [Arabidopsis thaliana] sp\|Q8RX88.1\|FACE1_ARATH RecName: Full=CAAX prenyl protease 1 homolog; AltName: Full=Farnesylated proteins-converting enzyme 1; Short=AtFACE-1; Short=FACE-1; AltName: Full=Prenyl protein-specific e	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	caax prenyl protease 1 homolog	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	87%
Blast2go	CAAX-box protein maturation	GO:0080120	Biological Process	87%
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M48	IPR001915	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9E7

Fln msg: your sequence is longer than subject: 274 - 228

Fln protein: MVVGLGLSVLLGPPIVSAIIIIVQKGGPYLAIYLWAFMLILSLVMMSLYPILIAPLFNKFTPLPEGELRSNIERLASSLKFPLKKLFVIDGSTRSTHSNAYMYGFYKNKRIVIYDTLIQQCKNEEEVVAVIAHELGHWKLNHTMYSFIAMQVLTLLQFGGYTLVRNSKDLFESFGFPS*PWLSVILIFQHTIMPIHHLVSFALNLVSRAFEFQADGFAKKLGYGAPLRAGLIKLQEENLSAMNTDPWYSAYHYSHPPLVERLAALDRSDEKED*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTGACCCCCGTATTGCCTTAGTATCGCGGCTTCCCCGGCACCCAACTCAACTGGAGATCAGGTCCACTGCGTCCCATTCTTTTACTAGTTGGCCCTTTATTCGCTACAGAACGAGGCAAGGCGAGGCGAGGCGAGGCCTGTCTTGGATTGGTCTAAAAAATGGCGTTTCCCTATTTGGAAGCTGTTGTTGGTTTCATGATCTTCATGTACTTCATTGAGACATACCTTGACTTGAGGCAACATACGTCACTTAAGCTTCCTCATCTGCCTAAGCCTTTAAAAGGAGTGGTGAGTCAGGATAAGTTTGAAAAATCTCGAGCTTACAGCATTGATAAAAGCCGCTTCCACTTTGTTCACGCAGCAGTGACCATCATAGGAGATTCAGCAATTTTACTTCTTCGAGCATTACCATTCCTTTGGCAGAAATCAGAAGTTGTAGTTGCAAACTTGGGCTTAGATCCTCATAATGAAATCATTCATACACTCGTATTTTTAGCAGCTGTTACTCTTTGGTCTCAGTTGATAGATCTGCCTTTTTCACTGTATTCAACTTTTGTCATTGAGGCTCGACATCGTGACCTTGGCTGTCACTCAGCTTTTTCTCAGAGAT_-_ATGGTTGTGGGTCTGGGCCTTTCAGTTTTACTTGGGCCACCAATTGTTTCAGCAATAATCATAATTGTGCAGAAAGGAGGTCCATATTTAGCAATATACCTTTGGGCCTTCATGCTTATACTATCACTAGTGATGATGTCTTTATATCCTATTCTTATAGCTCCACTCTTCAACAAGTTCACTCCTCTTCCGGAAGGGGAGCTTAGGTCGAATATTGAAAGGCTAGCATCATCTCTAAAGTTTCCGTTGAAGAAGCTATTTGTGATTGATGGTTCAACAAGATCGACACACAGCAATGCATACATGTATGGATTTTACAAGAACAAGCGTATAGTGATATATGACACCTTGATTCAGCAGTGCAAAAATGAGGAGGAAGTTGTTGCAGTTATTGCCCATGAATTGGGCCATTGGAAGCTCAATCATACAATGTATTCCTTTATTGCCATGCAGGTGCTTACACTATTACAATTTGGTGGCTATACTCTTGTTCGGAATTCAAAAGATCTCTTTGAAAGCTTTGGTTTCCCGTCGTGACCTTGGTTGTCGGTCATTCTTATTTTCCAGCATACCATAATGCCTATTCATCATCTTGTGAGCTTTGCTCTCAATCTTGTCAGTCGAGCATTTGAGTTCCAGGCTGATGGTTTTGCAAAGAAACTTGGCTATGGTGCTCCTCTCCGAGCAGGGCTTATTAAGTTGCAGGAGGAAAATTTATCGGCTATGAATACTGATCCCTGGTATTCAGCATATCATTATTCTCACCCTCCTCTTGTAGAGAGGCTTGCAGCATTGGACAGGTCTGATGAAAAAGAGGATTAG___GATTTGTTTGTGGGGTTTCATGTATATCCTTTTAATTCCTCGATATCTGCATGCATTTATATCATATCTGGGGTCCTGAATGCCTTGTTGCAGCCGATTTTGACTAATAGCAGAAAGCTGCTCGATGACCAAAATGTTGCTTCAGTAGCAACGAGGGTATATTATAGTTGGTTGTTTGAGTGGCAGATGTATAAAGTCAGCACTGCATTGCCTTTACATGTTCTGTAATAACAATGAATGTTTCAATTTTGCATGATAATAATGTTGCGTCCTATGTTTAGACATTGTTATAAAACTTAAGTTCGATGAAGTTGAAAGTTCCTCTTATTTTTCCGTGTGTGACAAATCATTTAGTAATGTTGACTTTTGAATGGTTTGGCGTTAGAAATTATAGGCGGCCAACTTTTAGCTCAAATGTAATTGAATTATATAAGGGCCTCTTATTAAAAAATAAGTTAACATGAGCGAAAGATACTAAGAAATTGAAATTTGAAGCATGCACGTGAGCTTTACTTTGAATTCTGCAATAAGGAAAATTCCAAGTGTGAAATAATCCCACTGGCACGATGATTGTAATATATAGTGTTTCCTTATCAGATCACATAACATTTTGTGCATCA

Fln Alignment:

Contig18951___MSLYPILIAPLFNKFTPLPEGELRSNIERLASSLKFPLKKLFVIDGSTRSTHSNAYMYGFYKNKRIVIYDTLIQQCKNEEEVVAVIAHELGHWKLNHTMYSFIAMQVLTLLQFGGYTLVRNSKDLFESFGFPS*PWLSVILIFQHTIMPIHHLVSFALNLVSRAFEFQADGFAKKLGYGAPLRAGLIKLQEENLSAMNTDPWYSAYHYSHPPLVERLAALDRSDEKED
D5A9E7________________MSLYPILIAPLFNKFTPLPEGGLRLKIERLASTLKFPLKKLFVIDGSTRSTHSNAYMYGFYNNKRIVIYDTLIQQCKNEEEVVAVIAHELGHWKLNHTMYSFVAMQVLTLLQFGGYTLVRNSKDLFESFGFQTQPVLVGLLIFQHTIMPIHHLVSFALNLVSRAFEFQADGFAKNLGYGAPLRAGLIKLQEENLSTMNTDPWYSAYHYSHPPLVERLAALDRSDKKEE

SNPs (tot: 116)

Position	A %	C %	G %	T %	Probability
83		33	66		0.997452
84	66		33		0.997452
87	66		33		0.997452
88			66	33	0.997452
90	33			66	0.997452
94		66		33	0.997452
97		66	33		0.997452
98		33	66		0.997452
100		66	33		0.997452
101		66		33	0.997452
108		33		66	0.997452
109	33			66	0.997452
194			14	85	0.999981
198		85		14	0.999981
202		14		85	0.999981
213		11		88	0.999937
217		11	88		0.999937
519		16		83	0.994512
520			16	83	0.994512
521		16		83	0.994512
599	50		50		1.0
601		50	50		1.0
603	33			66	1.0
604			50	50	1.0
605	50	16		33	1.0
606	16	83			0.994512
607	50	50			1.0
608	33			66	1.0
609	16			83	0.994512
610	50		50		1.0
611	50		50		1.0
612	33	66			1.0
613	16	33		50	1.0
614	50		50		1.0
615	50			50	1.0
616	33	66			1.0
617		40	20		1.0
620		50		50	1.0
622		50		50	1.0
623	50		50		1.0
642		14	85		0.993533
645		14		85	0.993533
650	14		85		0.993533
651		14		85	0.993533
656			85	14	0.993533
657		85	14		0.993533
659	10			90	0.90298
660		10		90	0.90298
1160		25		75	1.0
1161			25	75	1.0
1163		25	75		1.0
1166			25	75	1.0
1167	25			75	1.0
1170	40	46		13	1.0
1171	46		40	13	1.0
1172			13	86	0.999973
1173		86	13		0.999973
1174		53	46		1.0
1175		40		60	1.0
1176	40		60		1.0
1177	86			13	0.999973
1181		6	33		1.0
1183	46		46	6	1.0
1184	6	46	46		1.0
1185		53		46	1.0
1189		50	42	7	1.0
1190	50		50		1.0
1191		50	50		1.0
1192			50	50	1.0
1194	50	7			1.0
1260	78	15		5	1.0
1265	78	5		15	1.0
1267	15	84			1.0
1268	84	15			1.0
1269		15		84	1.0
1273	84		15		1.0
1274		15	84		1.0
1276			15	84	1.0
1277		84		15	1.0
1280		5	83		0.999887
1281			83	5	0.999887
1284	5	15	78		1.0
1318		90	10		0.999898
1322		90	10		0.999898
1323		90		10	0.999898
1326		10	90		0.999898
1328	90			10	0.999898
1329			90	10	0.999898
1337	10			90	0.999898
1449	5		85		0.999793
1450	78		15	5	1.0
1454	85	10		5	0.999793
1456	88	11			0.999937
1460		10		89	0.999919
1462	89			10	0.999919
1467		11		88	0.999937
1471		12		87	0.999964
1472	12			87	0.999964
1473		12	87		0.999964
1475		12	87		0.999964
1476	12		87		0.999964
1518	92	7			0.999532
1522	92	7			0.999532
1658	92	7			0.999602
1662	92			7	0.999602
1664	7	92			0.999602
1665	92	7			0.999602
1668			92	7	0.999602
1669		92	7		0.999602
1670	92		7		0.999602
1671		7		92	0.999664
1674		92		7	0.999664
1676	7			92	0.999664
1677		7		92	0.999664
1679	92	7			0.999664
1680	7	92			0.999664

SSRs (tot: 1)

Start position	End position	Sequence	Length
146	164	AGGCG AGGCG AGGCG AGGC	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain