SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18924

Length: 913 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18924

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16156	1/41
SustainPine v2.0	sp_v2.0_unigene19942	37/41
SustainPine v2.0	sp_v2.0_unigene60947	1/41

Source	Descriptions	Term	Type	Identity
AutoFact	SM/Sec1-family protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T9F7_PHYPA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	sec1 family transport protein sly1	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sec1-like protein	IPR001619	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
47	33	33	33		0.997753
48	33		33	33	0.997753
49	33	33		33	0.997753
50	33	33	33		0.997753
51	33	33	33		0.997753
52			33	66	0.997452
53		30	70		1.0
54	90	10			0.90298
55		30		70	1.0
56		10		90	0.90298
57	60	30		10	1.0
58	90			10	0.90298
60			10	90	0.90298
63			15	84	0.999986
67	84	15			0.999986
428		11		88	0.923564
430			88	11	0.923564
431	88	11			0.923564
432	88		11		0.923564
433		88		11	0.923564
434	88		11		0.923564
437	88	11			0.923564
438			88	11	0.923564
439	88			11	0.923564
442		11		88	0.923564
444		88	11		0.923564
446	87	12			0.992554
450	12		87		0.992554
455	87			12	0.992554
518	88			11	0.923564
520	87		12		0.992554
522			14	85	0.993533
524	85	14			0.993533
525		14		85	0.993533
526	85			14	0.993533
528	85		14		0.993533
529	85		14		0.993533
530	85	14			0.993533
537		11		88	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain