SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18906

Length: 1095 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18906

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5411	64/72
SustainPine v2.0	sp_v2.0_unigene24871	2/72
SustainPine v2.0	sp_v2.0_unigene77774	2/72

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	40s ribosomal protein s11	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	95%
Blast2go	translation	GO:0006412	Biological Process	95%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	95%
Blast2go	rRNA binding	GO:0019843	Molecular Function	95%
Blast2go	cell wall	GO:0005618	Cellular Component	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	chloroplast	GO:0009507	Cellular Component	95%
Blast2go	membrane	GO:0016020	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-
Sma3	Ribosomal protein S17	IPR000266	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
407	71	28			1.0
408			28	71	1.0
410	71	28			1.0
411			28	71	1.0
414	28			71	1.0
419	71			28	1.0
421		10	90		0.90298
422		20	80		0.999996
423	70			30	1.0
424		80	20		0.999996
426	70	20	10		0.999998
427	20			80	0.999996
428		90	10		0.90298
429	10			90	0.90298
431	20	80			0.999996
432	90			10	0.90298
434			11	88	0.923564
435		11		88	0.923564
442		12	87		0.992554
443	87			12	0.992554
444	87	12			0.992554
496		88	11		0.999952
706	91	8			1.0
707		5	94		0.998744
711	91		5	2	0.995208
712		5	94		0.998744
713	2		91	5	0.995912
716		5		94	0.998894
720	91	5			0.995912

SSRs (tot: 1)

Start position	End position	Sequence	Length
112	127	GCG GCG GCG GCG GCG G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain