SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18895

Length: 2748 nt

UniGene Fasta

>uagpf_v2_unigene18895
CGTCGTGACCTTGGCTGTCACTCATTTTTGTGTTCTCCCGCGTGGTTTGCGATCATTTTGCGGGACAGAACCCTCGACGGAGCTCGCCGTGTCCGACAACGCCACGTTTTGGCGGCCGCATATGCATCCCGATCATCTCGGCGCTCCATTGATGTAGCACCGTTGTCCCAATGCTGTAGATTTAGAGCAAATAGGCCCCGATTTCGGCTCATTTTAGGCCCAGATTTTGTAAATTTCGACTCTGTTGGATCCTTTGGTGAAGATTTGGGTTCGTCATACAGCTCGGGCCCATTCAGACTCTCAGCCCTATTAAATTAGATGCAGAGGGCGAAGGTCTGAAAATTTGGAAGAATTTATCGCGTTTTGTTTTCCTCTGGTCGCAGTTCTCTGAAGTTTCAAATGTTTTGAGTTGAGATTGGTGCATTTTGAGCCAGATTTGGTCTATTTTGCCTTCCATCCGATTTTTTAAGAGAGGGGCTTTAGAACATCGCATTGGCGCCCCAACGCCGAGCCCATCGCCACATTGGTGGCCAGATGCCGCAGAGCAGCGCCGCGGCTCTGTATGATTACGGGGTTTCCCTGCACAACATGGGGAGCTCTATCGATTCCAGCGATCCAGTCACCGCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCTTTCCCCTGAGTTGCGGGGGGAGTTTGGGGCAGGGCTCTTGGATCTGCATGCCATGGATGACACCGAGTTGTTTAGTGAGCACGCAGTTTCAGAACCTTTTGAAACATCACCATTTCTCCCAATGGTTGAGAAGGATTCTGGTACAACGATTGATATTGGCAAGCAACTAAAGGCACCAATGGATAATGCTTTCAAATCATCGTTGGTTGACAAAGAGCCGAGTGGAAAGGAGAGCAATTTGGCAAAGATTAAAGTTGTGGTTCGGAAAAGACCTTTGAATAAAAAGGAGTTGGCGAGGAAGGAGGAAGATATTATCACTGTTAATGATAATGTCTGGTTAAGTGTTCACGAACCAAAGTTGAAGGTGGATTTGACAGCTTATGTGGAGAAACACGATTTCGTGTTTGATGCTATTTTAGATGAACGTGTCTCAAATGATGAAGTTTATCGAGTTACTGTGGAGCCCATTGTTCCAACCATCTTTCAGCGTACAAAAGCTACATGCTTTGCATACGGTCAAACAGGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTAAGAGCCTCAGAGGATATACTTAAGTTGATGAACAGAACTTTATATCGAGAGCAAGGGTTTCGCTTGTGGCTTAGTTTCTTTGAGATATATGGGGGCAAACTATATGATCTTCTTGGTGACAGGAGGAAATTGTGTATGAGGGAGGATGCCCGGCAACAAGTTTGCATTGTTGGTTTGCAAGAATTTGAAGTCTCAGACATACAATGTGTAAAGGAGTATATTGAGAAAGGGAATGGAGCCCGAAGCACAGGTTCAACTGGTGCTAATGAAGAGTCATCCAGGTCTCATGCTATCTTGCAGCTTGCAATTAAGAAGCATGGTGAAGGAAAAGAGTCTAAGGGCGGTAGAATAGTTGGGAAGCTATCTTTTATTGATCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACAAGGATGGAGGGAGCGGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTACGTCGTGACCTTGGCTGTCACTCAATTTCGAGGAAGCAAGTTGACGGAAGTGCTTCGTGATTCCTTTGTAGGAAACTCACGGACGGTTATGATATCATGTGTTTCTCCTAATTCGGGTTCTTGTGAGCATACACTTAATACATTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATATGAAAAAGGATCAAAGTACAAGCAGTTCAGCTCTGCCTCCAAAGGATTTGTCTTCATCCCCACCTTTGCCTTTGGAGGATGCAAGGGAGTATTCTGATTATAACCAAACTGTAGCAAATGTAGATGCTGGTAGAAGGTCTGTGGACAATCCTCAATATTACAGTCAATCTGAAGAACTTGGAAGGCTTCCTTCTAGTTTGTCATCGAGTTATCCCTTTAATAGCAGAGAGGAAAGTGGCTTTTCAGGTATGGTTGAAAACAATAGAGTTAACATGAAAGAGGGTATTGCTGGTCCTGTTACAAGTCAAAAGTCCTCTTCAGCTATGAATTCTTTTGATACATACGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAGGTAAGCAGAGATGAAAAACCGGACAAACAGATAAACTGGACATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAGCAGCAATTTAAGGAAGATCCTGCTTCAAATAACAATGCTCCCAGACTCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAAGCTTTAATAGCGGCCCACAGGAAGGAGATTGAAGATACAATGGATTTAGTGCGTGAGGAAAT

Ace file of the UniGene uagpf_v2_unigene18895

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7699	22/42
SustainPine v2.0	sp_v2.0_unigene28917	17/42

Source	Descriptions	Term	Type	Identity
AutoFact	kinesin family member 2/24 [Arabidopsis thaliana] ref\|NP_850598.1\| kinesin family member 2/24 [Arabidopsis thaliana] gb\|AAL07208.1\| putative kinesin protein [Arabidopsis thaliana] dbj\|BAE98696.1\| kinesin like protein [Arabidopsis thaliana] gb\|AEE75845.1\|	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	kinesin family member 2 24	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	microtubule-based movement	GO:0007018	Biological Process	74%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	74%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	74%
Blast2go	Golgi stack	GO:0005795	Cellular Component	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%
Blast2go	microtubule	GO:0005874	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sterile alpha motif domain	IPR001660	-	0.0	-
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Separated hits, possible frame ERROR between 1920 and 1937, Distance to subject end: 60 aas, your sequence is longer than subject: 738 - 509

Fln protein: MPQSSAAALYDYGVSLHNMGSSIDSSDPVTARWLQSAGLQHLAPMASTGMDHRLLPNLLMQGYGAQSLDEKQKLFKFFKGMNLGAESGSEPITPTAQSSAGLAATDGFLSPELRGEFGAGLLDLHAMDDTELFSEHAVSEPFETSPFLPMVEKDSGTTIDIGKQLKAPMDNAFKSSLVDKEPSGKESNLAKIKVVVRKRPLNKKELARKEEDIITVNDNVWLSVHEPKLKVDLTAYVEKHDFVFDAILDERVSNDEVYRVTVEPIVPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRASEDILKLMNRTLYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLAIKKHGEGKESKGGRIVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALRRxxxxxxxFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNMKKDQSTSSSALPPKDLSSSPPLPLEDAREYSDYNQTVANVDAGRRSVDNPQYYSQSEELGRLPSSLSSSYPFNSREESGFSGMVENNRVNMKEGIAGPVTSQKSSSAMNSFDTYVDEKVQKVSPTRRKVSRDEKPDKQINWTSKEDGKSEAFNAVRKQQQQFKEDPASNNNAPRLKERVQTDYDNDINAILQEEEALIAAHRKEIEDTMDLVREE

Protein Length: 739

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGTGTTCTCCCGCGTGGTTTGCGATCATTTTGCGGGACAGAACCCTCGACGGAGCTCGCCGTGTCCGACAACGCCACGTTTTGGCGGCCGCATATGCATCCCGATCATCTCGGCGCTCCATTGATGTAGCACCGTTGTCCCAATGCTGTAGATTTAGAGCAAATAGGCCCCGATTTCGGCTCATTTTAGGCCCAGATTTTGTAAATTTCGACTCTGTTGGATCCTTTGGTGAAGATTTGGGTTCGTCATACAGCTCGGGCCCATTCAGACTCTCAGCCCTATTAAATTAGATGCAGAGGGCGAAGGTCTGAAAATTTGGAAGAATTTATCGCGTTTTGTTTTCCTCTGGTCGCAGTTCTCTGAAGTTTCAAATGTTTTGAGTTGAGATTGGTGCATTTTGAGCCAGATTTGGTCTATTTTGCCTTCCATCCGATTTTTTAAGAGAGGGGCTTTAGAACATCGCATTGGCGCCCCAACGCCGAGCCCATCGCCACATTGGTGGCCAG_-_ATGCCGCAGAGCAGCGCCGCGGCTCTGTATGATTACGGGGTTTCCCTGCACAACATGGGGAGCTCTATCGATTCCAGCGATCCAGTCACCGCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCTTTCCCCTGAGTTGCGGGGGGAGTTTGGGGCAGGGCTCTTGGATCTGCATGCCATGGATGACACCGAGTTGTTTAGTGAGCACGCAGTTTCAGAACCTTTTGAAACATCACCATTTCTCCCAATGGTTGAGAAGGATTCTGGTACAACGATTGATATTGGCAAGCAACTAAAGGCACCAATGGATAATGCTTTCAAATCATCGTTGGTTGACAAAGAGCCGAGTGGAAAGGAGAGCAATTTGGCAAAGATTAAAGTTGTGGTTCGGAAAAGACCTTTGAATAAAAAGGAGTTGGCGAGGAAGGAGGAAGATATTATCACTGTTAATGATAATGTCTGGTTAAGTGTTCACGAACCAAAGTTGAAGGTGGATTTGACAGCTTATGTGGAGAAACACGATTTCGTGTTTGATGCTATTTTAGATGAACGTGTCTCAAATGATGAAGTTTATCGAGTTACTGTGGAGCCCATTGTTCCAACCATCTTTCAGCGTACAAAAGCTACATGCTTTGCATACGGTCAAACAGGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTAAGAGCCTCAGAGGATATACTTAAGTTGATGAACAGAACTTTATATCGAGAGCAAGGGTTTCGCTTGTGGCTTAGTTTCTTTGAGATATATGGGGGCAAACTATATGATCTTCTTGGTGACAGGAGGAAATTGTGTATGAGGGAGGATGCCCGGCAACAAGTTTGCATTGTTGGTTTGCAAGAATTTGAAGTCTCAGACATACAATGTGTAAAGGAGTATATTGAGAAAGGGAATGGAGCCCGAAGCACAGGTTCAACTGGTGCTAATGAAGAGTCATCCAGGTCTCATGCTATCTTGCAGCTTGCAATTAAGAAGCATGGTGAAGGAAAAGAGTCTAAGGGCGGTAGAATAGTTGGGAAGCTATCTTTTATTGATCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACAAGGATGGAGGGAGCGGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTACGTCGTGAxxxxxxxxxxxxxxxxxxATTTCGAGGAAGCAAGTTGACGGAAGTGCTTCGTGATTCCTTTGTAGGAAACTCACGGACGGTTATGATATCATGTGTTTCTCCTAATTCGGGTTCTTGTGAGCATACACTTAATACATTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATATGAAAAAGGATCAAAGTACAAGCAGTTCAGCTCTGCCTCCAAAGGATTTGTCTTCATCCCCACCTTTGCCTTTGGAGGATGCAAGGGAGTATTCTGATTATAACCAAACTGTAGCAAATGTAGATGCTGGTAGAAGGTCTGTGGACAATCCTCAATATTACAGTCAATCTGAAGAACTTGGAAGGCTTCCTTCTAGTTTGTCATCGAGTTATCCCTTTAATAGCAGAGAGGAAAGTGGCTTTTCAGGTATGGTTGAAAACAATAGAGTTAACATGAAAGAGGGTATTGCTGGTCCTGTTACAAGTCAAAAGTCCTCTTCAGCTATGAATTCTTTTGATACATACGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAGGTAAGCAGAGATGAAAAACCGGACAAACAGATAAACTGGACATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAGCAGCAATTTAAGGAAGATCCTGCTTCAAATAACAATGCTCCCAGACTCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAAGCTTTAATAGCGGCCCACAGGAAGGAGATTGAAGATACAATGGATTTAGTGCGTGAGGAAAT

Fln Alignment:

Contig18895___MQPLPLRASEDILKLMNRTLYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLAIXXXXXXXXXXXXRIVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALRRDxxxxxxFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNMKKDQSTXXXXXXXXXXXXXXXXXXEDAREYSDYNQTVANVDAGRRSVDNPQYYSQXXXXXXXXXXXXXXYPFNSREESGFSGMVENNRVNMKEGIAGPVTSQKSSSA-MNSFDTYVDEKVQKVSPTRRKVSRDEKPDKQINWTSKEDGKSEAFNAVRKQQQQFKEDPASNNNAPRLKERVQTDYDNDINXXXXXXXXXXXXHRKEIEDTMDLVREE
D5ACB2________________MQPLPLRASEDILKLMNRPFYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDxxxxxxFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSLSLPPKDSSSSPPLPLEDAREFSDYNQTVANTDAGRRSVDNPQYYNQSEELGRHPSSLSSSYAFTSREESGFSSLVENNRVNMRDGIAGPVTSQKSSSAAMNSFDPYGDEKVHKVSPTRRKVSREEKPDKQINWISKEDGKSEAFNAVRKQQQQFKEDPASNNTAPRLKERVQTDYDNDINAILQEEEALIAAHRKEIEDTMDLVREE

SNPs (tot: 92)

Position	A %	C %	G %	T %	Probability
25			50	50	1.0
189	71		28		1.0
190	71			28	1.0
191	71	28			1.0
192			28	71	1.0
193	69			30	1.0
195	30		69		1.0
199		69		30	1.0
200		69	30		1.0
202	69	30			1.0
204			30	69	1.0
208	30		69		1.0
390			14	85	0.993533
468		20		80	0.995493
469			20	80	0.995493
470		20		80	0.995493
1252	20		80		0.995493
1437		66		33	0.997452
1438	66	33			0.997452
1440	66	33			0.997452
1669	88	11			0.923564
1671		88		11	0.923564
1673		88	11		0.923564
1674			88	11	0.923564
1675	88		11		0.923564
1677		11	88		0.923564
1679	88			11	0.923564
1680		88		11	0.923564
1681	88		11		0.923564
1683		11	88		0.923564
1688	88			11	0.923564
1690	11			88	0.923564
1693	22			77	0.999999
1749	87		12		0.992554
1751		12	87		0.992554
1756	87	12			0.992554
1757			87	12	0.992554
1758			87	12	0.992554
1759	87		12		0.992554
1760	87		12		0.992554
1761	87	12			0.992554
1762	87			12	0.992554
1764	87			12	0.992554
1765		12	87		0.992554
1766	12			87	0.992554
1769	87	12			0.992554
1773			87	12	0.992554
1819		14		85	0.993533
1921	80	20			0.995493
1922		50	50		1.0
1923	50		50		1.0
1925	50	50			1.0
1926	50		50		1.0
1933	50			50	1.0
1934	50		50		1.0
1935	50		50		1.0
1936		50		50	1.0
1938		50	50		1.0
1939	50			50	1.0
1940		50		50	1.0
1942		50		50	1.0
1945	50	50			1.0
1963		20		80	0.995493
1965	80			20	0.995493
1970	80	20			0.995493
1971			80	20	0.995493
1974		80	20		0.995493
1975		20		80	0.995493
1980		20	80		0.995493
1982		20		80	0.995493
1985	20	80			0.995493
2044		25		75	1.0
2049		25	75		1.0
2051	75			25	1.0
2054	75		25		1.0
2056	75			25	1.0
2057		75	25		1.0
2059		25		75	1.0
2061	75	25			1.0
2063	75	25			1.0
2064	25	75			1.0
2115	77	22			0.999999
2116	88		11		0.923564
2117	88			11	0.923564
2118	88	11			0.923564
2122		11		88	0.923564
2124	88			11	0.923564
2125	88			11	0.923564
2126	88		11		0.923564
2129	88			11	0.923564
2132	88	11			0.923564
2133			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain