SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18849

Length: 1476 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18849

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22773	5/125
SustainPine v2.0	sp_v2.0_unigene23774	42/125
SustainPine v2.0	sp_v2.0_unigene25624	40/125
SustainPine v2.0	sp_v2.0_unigene60356	34/125

Source	Descriptions	Term	Type	Identity
AutoFact	xyloglucan endotransglycosylase precursor [Populus tremula x Populus tremuloides]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNJ5

Fln msg:

Fln protein: MASLSMQSCFLILALCFWASHCAQFNDIFEPSWATDHVMYEGELLKLKLDNISGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGKREQRIYLWFDPTADFHSYSFLWNHNQVVFFVDSVPIRVFPNNERLGVPYPKSQPMRVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNAESGVNETGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF*

Protein Length: 286

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTAGTGGAGTTTTTCTCCATACGCTGCAGAGAATATGCAGTACCATTTGTTTCGAACACGCGACCAAGCGTGGCAAATTCCTTGCCTGTAACTCGGGGTTAGGCTCTAGTGGTTTGGCAGAGCACTAGCTCGTTTAACGTTGGGGCCCGGTCGGATGATGCCGGACCGCTTTCACGGATCTCTAAAAATTTGACCCTGAGAGTACATTGTGACTGTATATACTTTGCATTTGCATTTGGTAGATATTTTTGGGCCAGCGTAATATAAAGTCGGAGCAGAGGCCTATATATTTCACACTGGTTCTGTTGGGTAGCAGCGTAGTGCAGATAAGCTGTTGTTAAT_-_ATGGCTTCTTTGAGTATGCAGAGCTGCTTCTTAATTCTGGCTCTTTGCTTCTGGGCATCCCATTGTGCACAGTTTAATGATATCTTCGAGCCCAGCTGGGCGACAGATCATGTTATGTATGAGGGAGAGCTGTTGAAGCTTAAGCTGGACAATATTTCCGGGGCTGGCTTTGCTTCCAAGGCAACATATTTGTTTGGAAAAGCAGGGGCACAGATTAAGCTCGTTCCAGGTGACTCTGCAGGCACAGTTACTGCTTTTTATATGTCTTCTGAGGGGACTCTGCACGACGAATTCGATTTCGAATTCTTGGGAAATGCTTCGGGTGAGCCTTACATTGTGCAGACTAATATCTACTCCAACGGCACTGGCAAGAGGGAACAACGGATTTACCTCTGGTTCGACCCTACGGCAGATTTCCATTCCTATTCTTTTCTGTGGAACCACAACCAAGTTGTATTCTTTGTGGATAGTGTTCCGATTCGGGTATTCCCCAACAACGAGCGGCTGGGAGTCCCATATCCGAAAAGCCAGCCGATGAGAGTATCCTCCTCAATCTGGAATGCAGACGACTGGGCTACACAAGGCGGGCTGGTGAAGACAAACTGGAGCCATTCTCCTTTCATCTCCACTTACAAAAGCTTCGACATTGATGCAAACGAATACGGACTGAATGCAGAATCAGGAGTTAATGAGACTGGAAGTAAGTGGTGGGATATGCCCTCTTATTCTTCCCTCTCTCCACAGCAAAGGCGAATGCTCCGATGGGTGCATCGGAACTACATTATCTATGACTATTGCAAAGATTCAACAAGGTTTTCCACTTCGCCACCTGAGTGTGCAGGCCTCCGTTTCTAG___TCCATTATGTTTTAACATTTCTGAGTGTAGAGCCCTGCTTGCTCAGCTCAATTTTGCTGTTGGTGCTGGCAATGCAACTGATGAATCTCTATGATGGTTCCACACAGACAAAATCATGGTACTATCTCAATGATGCCTCTGGGGATAGCTTCTGCCACTCATTCTCCTAATGTGTAATATGAAGCCGGAATGTTTATATACATTCTGGCATGATCAGGAATAATGCAATCTTTTTCTCCATTGTAGTGAGTG

Fln Alignment:

Contig18849___MASLSMQSCFL-ILALCFWASHCAQFNDIFEPSWATDHVMYEGELLKLKLDNISGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGKREQRIYLWFDPTADFHSYSFLWNHNQVVFFVDSVPIRVFPNNERLGVPYPKSQPMRVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNAES-GVNETGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF
A9NNJ5________________MACVSKQRCFFFILALCFWASNCAEFNDIFEPSWAMDHVMYEGELLKLRLDNISGAGFSSKAAYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGNREQRIYLWFDPTADFHSYSFLWNHNQVVFLVDSVPIRVFPNNERLGVPYPKKQPMKVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNGESRGVNENGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF

SNPs (tot: 110)

Position	A %	C %	G %	T %	Probability
112		42	57		1.0
117	42	57			1.0
131		63	36		1.0
221		72		27	1.0
251			8	91	0.999766
255	85	7	3		0.997433
258	3		7	88	0.998862
261	88	3		7	0.998862
262			8	92	0.999718
264		8	4	88	0.999262
265	8		92		0.999718
266		8	92		0.999718
268	92	8			0.999718
269	8	4	88		0.999262
270	92			8	0.999718
295	90	10			1.0
304	88	11			1.0
305			90	9	1.0
306	88			11	1.0
312	90		7		0.999998
316	64	2	33		1.0
317		7		92	0.999999
319		7		92	0.999999
320	7	92			0.999999
679		16	83		0.999991
681	83			16	0.999991
682	83	16			0.999991
683	83		16		0.999991
687		16		83	0.999991
689		83		16	0.999991
692		16	83		0.999991
695	83			16	0.999991
696		16	83		0.999991
697	16	83			0.999991
700	16			83	0.999991
736		11	88		0.923564
739	87			12	0.992554
740	87	12			0.992554
744			83	16	0.994512
747	83		16		0.994512
748		83		16	0.994512
749	80		20		0.995493
774			14	85	0.993533
775	85			14	0.993533
778			85	14	0.993533
779		85	14		0.993533
781		14	85		0.993533
782	85	14			0.993533
785			14	85	0.993533
786		85	14		0.993533
788	85			14	0.993533
789			14	85	0.993533
808	87	12			0.992554
809	87		12		0.992554
810		87		12	0.992554
812	87		12		0.992554
813		87		12	0.992554
814	87		12		0.992554
818	87			12	0.992554
819	87		12		0.992554
821		12		87	0.992554
876			87	12	0.992554
877		12	87		0.992554
879	87	12			0.992554
899	77	22			0.999999
901		77		22	0.999999
905		11		88	0.923564
908		22	77		0.999999
909	77	22			0.999999
910			77	22	0.999999
912	77		22		0.999999
913			22	77	0.999999
916		77	22		0.999999
974		88	11		1.0
976		11		88	1.0
977		18	70	11	1.0
979	70			29	1.0
980		11	85	3	1.0
984	81			18	1.0
985	7			92	0.999602
987			18	81	1.0
989		7		92	0.999602
990			18	7	1.0
991		81		18	1.0
993	18			81	1.0
994		18		81	1.0
1075	93	6			0.999364
1078	93		6		0.999364
1079	93			6	0.999364
1081	6			93	0.999364
1082		7	92		0.999532
1083		7	92		0.999532
1085			92	7	0.999602
1088	92	7			0.999602
1090	92		7		0.999602
1094	8	92			0.999718
1224	5	5		89	0.979359
1225		2	5	91	0.993509
1228	2		5	91	0.99441
1229	94			5	0.998578
1231	5			94	0.998578
1234	94			5	0.998744
1236			5	94	0.998744
1237	94		5		0.998894
1238		45		54	1.0
1241	5			94	0.998894
1242		5		94	0.998894
1244	94	5			0.998894
1327			50	50	1.0
1388		56	43		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain