SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18840

Length: 956 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18840

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21983	45/45

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast chaperonin 21 n=1 Tax=Vitis vinifera RepID=Q6B4V4_VITVI	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	chaperonin 20	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	81%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	81%
Blast2go	copper ion binding	GO:0005507	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	apoplast	GO:0048046	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin 21, chloroplast	IPR017416	-	-
Sma3		IPR001476	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRZ6

Fln msg: Separated hits, possible frame ERROR between 465 and 504,

Fln protein: MATSQMGRGLTLKSYEGLRPAFPSKPSMASSSVSLRRFSCTTLSVRAATSVASKFSTLKPLGDRVLIKLKQAEEKTQGGILLPATSQKRPEGGEVVALxxxxxxxxxxxxxxSSAVGANIVYSKWAGTEIEFNGVNHLLVKEDDIVGVLDTDDIKDLKPLNDRVLIKVAVAEEKTAGGLLLTESAKEKPSIGTIIAVGPGAYDEEGKRKPMSVTAGNTVLYSKFAGNEFKSGDGSEYVTLRVSDVLAVLS*

Protein Length: 252

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGGCATACCAGAACCATCTGGAAGCTTGTCTGATCTAATCTATATATGCGTCGTGACCTTGGCTGTCACTCAGTCTTCCAATCATTCAGTAGCTCCGTAAGGTTTTTCCATTTCTTTTAGTCAAGCTTTCCTGCGTTTCGAA_-_ATGGCGACCTCTCAGATGGGCAGGGGCCTTACTCTGAAGTCCTACGAGGGCCTGAGACCGGCTTTTCCCAGCAAGCCATCTATGGCGTCGTCCTCAGTGTCTCTCAGACGCTTTTCCTGCACCACGCTCTCTGTCAGGGCTGCAACTTCCGTGGCTTCCAAGTTTTCTACATTGAAGCCCCTGGGTGACCGAGTTTTGATTAAACTTAAGCAGGCGGAAGAGAAAACCCAAGGCGGTATCTTGCTACCCGCCACATCCCAGAAAAGACCCGAAGGGGGAGAGGTTGTGGCTCTTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGTTCCGCTGTCGGTGCAAATATTGTGTATTCGAAGTGGGCTGGCACAGAGATTGAATTCAATGGAGTTAATCATCTTCTTGTAAAGGAAGATGACATTGTGGGGGTTCTTGATACAGATGATATCAAGGACTTGAAGCCATTGAATGATCGAGTTTTGATTAAGGTTGCAGTGGCAGAAGAGAAGACAGCTGGTGGTCTGCTCCTCACTGAAAGTGCCAAGGAGAAACCTTCTATAGGAACGATAATCGCAGTAGGACCTGGTGCTTATGATGAAGAAGGAAAGAGGAAGCCGATGTCAGTAACTGCTGGAAATACTGTTCTATACTCGAAATTTGCTGGTAATGAATTTAAAAGTGGTGATGGGTCCGAATACGTGACATTGAGAGTGTCAGATGTGTTGGCTGTACTCTCTTAG___CTCTAATATTGAATGCCCAGTAATTGTTGTTAGTGC

Fln Alignment:

Contig18840___MATSQMGRGLT----LKSYEGLRPAFPXXXXXXXXXXXLRRFSCT-TLSVRAATSVASKFSTLKPLGDRVLIKLKQAEEKTQGGILLPATSQKRPEGGEVVALGDAKTVGKTQIPFSVPLSVQILxxxxxxxxxxxxxSSAVGANIVYSKWAGTEIEFNGVNHLLVKEDDIVGVLDTDDIKDLKPLNDRVLIKVAVAEEKTAGGLLLTESAKEKPSIGTIIAVGPGAYDEEGKRKPMSVTAGNTVLYSKFAGNEFKSGDGSEYVTLR
A9NRZ6________________MATSQLGCASTTRVGLLSFEGLRSSINASSSRAPCSVAIRHQPFRRNLVVKAATTVAPKFTTIKPLGDRVLVKIQAIEEKSRGGILLPDTTQDKPQGGEVVAVGEGKSFSKTQVEPSVQLGAKIIxxxxxxxxxxxxxSVQLGAKIIYSKYAGTELEFNGVDHLLLKEDDIVGLLETDDIKDLKPLNDRVLIQVSKAEEKTTGGILLTETAKEKPSTGTVIAVGPGMYDEEGNRKPINISPGKTVLYSKYAGNEFKSSDGSQYVSMR

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
77	25		75		1.0
82	25		75		1.0
84	25	75			1.0
89		25	75		1.0
90	25	75			1.0
92			75	25	1.0
96		75		25	1.0
98		75		25	1.0
99	75			25	1.0
118	12		87		0.992554
136	87	12			0.992554
144		87		12	0.992554
304		44		55	1.0
310			61	38	1.0
337		9		72	0.999994
504		66	33		0.997452
506		33	66		0.997452
507		33		66	0.997452
509		66		33	0.997452
510		66	33		0.997452
517	33		66		0.997452
518		33	66		0.997452
520		33	66		0.997452
521	33	66			0.997452
530		40		60	1.0
533	60	40			1.0
534			40	60	1.0
537		20	80		0.995493
539	60	40			1.0
540		40	60		1.0
542			60	40	1.0
548			60	40	1.0
574	83	16			0.994512
575	83		16		0.994512
578	83		16		0.994512
580		83	16		0.994512
581	16			83	0.994512
582		16		83	0.994512
588	83		16		0.994512
589	83	16			0.994512
590	83			16	0.994512
592			83	16	0.994512
593	83	16			0.994512
595		16	83		0.994512
596	83			16	0.994512
597		16		83	0.994512
598	16		83		0.994512
616		25		75	1.0
618	75			25	1.0
619			25	75	1.0
622	75	25			1.0
623			75	25	1.0
624	75			25	1.0
625			25	75	1.0
627	75	25			1.0
629	75		25		1.0
633	75	25			1.0
634			75	25	1.0
635		25	75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain