SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18811

Length: 938 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18811

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6299	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	arabinose kinase [Arabidopsis thaliana] sp\|O23461.1\|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb\|CAB10392.1\| galactokinase like protein [Arabidopsis thaliana] emb\|CAB78655.1\| galactokinase like protein [Arabidopsis thaliana] gb\|AEE83696.1\| a	-	-	67%
FL-Next	sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	galactokinase like protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-arabinokinase.	EC:2.7.1.46	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Galactokinase.	EC:2.7.1.6	-	83%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	83%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	arabinose metabolic process	GO:0019566	Biological Process	83%
Blast2go	phosphorylation	GO:0016310	Biological Process	83%
Blast2go	RNA processing	GO:0006396	Biological Process	83%
Blast2go	L-arabinokinase activity	GO:0009702	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	galactokinase activity	GO:0004335	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Galactokinase	IPR000705	-	-
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	GHMP kinase, ATP-binding, conserved site	IPR006203	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3		IPR012366	-	-
Sma3	Galactokinase, glycosyltransferase	IPR012369	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23461

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 692 aas, your sequence is shorter than subject: 312 - 1039

Fln protein: S*PWLSLNRLP*LNRMDGRSQDRDSAASLRLKFAYYVTGHGFGHATRVVEVARHLVAAGHEVHVVTGAPDFVFTSEISSSNLSIRKVLLDCGAVQADALTVDRLASLEKYSQTAVVPRASILATEVEWLKSIKADLVISDVVPVACRAAADAGIPSVCVTNFSWDFIYAEYVMEAGYHHRSTVWQIAEDYSHCLFLLRLPGYCPMPAFRDVIDVPLVVRKARRSREEVRKELGVSDDTKLVIFNFGGQQASWTLKEESLPPGWICLVCAASPKQVFPPNFKRLAADVYTPDLIAACDCMLGKIGYGTVSEAL

Protein Length: 313

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTTTACCATAACTCAACAGGATGGACGGGAGGTCGCAGGATCGGGACTCTGCAGCGTCTCTGCGCCTGAAATTCGCTTATTATGTAACAGGCCATGGATTCGGCCACGCCACCCGAGTCGTGGAGGTGGCACGACATCTTGTTGCAGCAGGACATGAAGTTCATGTGGTTACTGGGGCTCCAGACTTTGTTTTCACTAGTGAAATAAGTTCTTCTAACTTGTCCATTCGCAAGGTTTTGCTTGATTGTGGAGCTGTACAAGCAGATGCTTTGACTGTTGATCGACTTGCATCCTTAGAGAAGTATTCCCAGACAGCAGTTGTACCACGTGCCTCAATATTGGCTACTGAAGTAGAATGGCTGAAATCAATCAAGGCAGATTTGGTGATCTCAGATGTTGTACCTGTGGCATGTCGAGCGGCAGCAGATGCTGGTATCCCATCTGTCTGTGTGACCAATTTCAGTTGGGATTTTATATATGCAGAATATGTTATGGAAGCTGGTTATCATCACCGTTCCACAGTTTGGCAGATAGCTGAAGACTATTCTCATTGCCTTTTCTTGCTCAGACTTCCTGGCTATTGTCCTATGCCAGCTTTTCGTGATGTTATTGATGTGCCCCTCGTTGTTAGGAAAGCACGAAGAAGTCGTGAAGAGGTGCGTAAAGAACTTGGGGTTAGTGATGATACCAAGTTAGTTATCTTCAATTTTGGTGGTCAGCAAGCTAGCTGGACCTTGAAGGAAGAATCATTACCACCTGGTTGGATATGCTTGGTATGTGCTGCATCTCCAAAGCAAGTGTTTCCACCCAACTTTAAAAGGCTTGCAGCAGATGTCTACACACCTGATCTGATTGCAGCATGCGACTGCATGCTAGGCAAAATTGGATATGGTACTGTGAGTGAGGCCTTG

Fln Alignment:

Contig18811___SLNRLP*LNRMDGRSQDRDSAASLRLKFAYYVTGHGFGHATRVVEVARHLVAAGHEVHVVTGAPDFVFTSEISSSNLSIRKVLLDCGAVQADALTVDRLASLEKYSQTAVVPRASILATEVEWLKSIKADLVISDVVPVACRAAADAGIPSVCVTNFSWDFIYAEYVMEAGYHHRSTVWQIAEDYSHCLFLLRLPGYCPMPAFRDVIDVPLVVRKARRSREEVRKELGVSDDTKLVIFNFGGQQASWTLKEESLPPGWICLVCAASPKQVFPPNFKRLAADVYTPDLIAACDCMLGKIGYGTVSEAL
O23461________________SSQRLPEKMRID--ENEGVSASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTSEIQSPRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRAEILETEVEWLHSIKADFVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIAEDVNVVILNFGGQPSGWNLKETSLPTGWLCLVCGASETLELPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEAL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
42	81		18		0.999994
43	81			18	0.999994
44		81	18		0.999994
46		18	81		0.999994
47		18	81		0.999994
48	81			18	0.999994
54			81	18	0.999994
56			81	18	0.999994
57	81	18			0.999994
58	18		81		0.999994
59		18	81		0.999994
63	18	81			0.999994
422		33		66	0.997452
425		33		66	0.997452
467	75		25		0.996473
472	25			75	0.996473
474		25		75	0.996473
475			75	25	0.996473
480	75	25			0.996473
481		75		25	0.996473
482		75	25		0.996473
483	75			25	0.996473
484	75	25			0.996473
485	25			75	0.996473
486		25		75	0.996473
599			25	75	0.996473
602		75	25		0.996473
605	25		75		0.996473
608	75	25			0.996473
612			25	75	0.996473
615		75	25		0.996473
619		25		75	0.996473
620			75	25	0.996473
622	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain