SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18805

Length: 1914 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18805

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23598	127/129
SustainPine v2.0	sp_v2.0_unigene62476	2/129

Source	Descriptions	Term	Type	Identity
AutoFact	golgi nucleotide sugar transporter 2 [Arabidopsis thaliana] sp\|Q84L09.1\|GONS2_ARATH RecName: Full=GDP-mannose transporter GONST2; AltName: Full=Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 2 emb\|CAD83086.1\| GONST2 Golgi Nucleotide sugar transporter [Arabido	-	-	66%
FL-Next	sp=GDP-mannose transporter GONST1; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	gdp-mannose transporter	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	GDP-mannose transport	GO:0015784	Biological Process	81%
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	81%
Blast2go	GDP-mannose transmembrane transporter activity	GO:0005458	Molecular Function	81%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	IPR019379	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q941R4

Fln msg:

Fln protein: MASKSRTSAGSRPISDDFDVEDGKVEKDVERTVREHGFIKVRNQALISGLAYCLSSCSMILLNKVVLSGYNLDAGISLMFYQSLVSVAVVYALTLFGIITTEPFTWNLVRVWIPVNIIFVGMLVTSNFSLKYINIAMLTILKNVTNIITALGEMYLFKKHQNNKVWAALIFMVISAISGGITDLSFHVVGYAWQIVNCFLTAAYSLTLRRVMDVAKQQTKSGNLNEFSMVLLNNLLSLPLGLSLIIVSNEWEYLYSSPVLRIPVFWVVATSSGLLGLAISFTSMWFLHQTGPTTYSLVGSLNKIPISLAGILLFKVPINVPNLFSILFGLFAGVFFAKAKMTK*

Protein Length: 345

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATTTTGGTATTTCTGTGAATGCCTAGTTTGAGTTACTGGATCAAGTTGGGAGTATTGGGAGATAAGCAATTATCAATAATTAGTTAACAGAACAAACGATATATTTTGGGTTTCAGGCATGGCAGTGAGGTCTTGGACAGCACATCTGAATTAAAGCTCAGAGACGGCC_-_ATGGCCTCAAAATCAAGAACATCCGCAGGATCACGACCAATATCTGATGATTTTGATGTAGAGGATGGTAAAGTGGAGAAAGACGTTGAAAGGACTGTCCGGGAACATGGGTTCATAAAAGTGCGGAACCAGGCCCTTATTTCTGGATTGGCATATTGTCTTTCTTCATGCAGCATGATCCTGCTTAATAAAGTTGTTCTCTCAGGTTATAATTTAGATGCAGGGATATCTCTAATGTTTTACCAGAGCCTTGTGTCTGTGGCAGTTGTGTATGCCCTCACCTTGTTTGGAATAATTACAACAGAACCATTCACTTGGAACCTTGTACGAGTATGGATTCCTGTGAATATCATCTTTGTTGGAATGCTTGTTACGAGTAATTTCAGTTTGAAATATATAAATATTGCAATGTTGACAATTTTGAAGAATGTTACAAATATCATAACAGCTCTAGGAGAGATGTATCTTTTCAAGAAGCATCAGAACAACAAAGTTTGGGCTGCTCTCATTTTCATGGTGATATCTGCTATTAGTGGAGGAATTACAGATCTCTCTTTTCATGTGGTGGGTTATGCTTGGCAAATTGTGAATTGTTTCCTGACAGCAGCATATTCGCTAACACTGCGCAGAGTTATGGATGTGGCAAAGCAACAAACAAAATCAGGAAATTTGAATGAATTCTCAATGGTGTTGCTGAACAATTTACTTTCACTACCTTTGGGACTTTCACTAATTATAGTTTCCAATGAATGGGAATACTTATATTCTTCGCCCGTACTTAGGATTCCAGTGTTTTGGGTTGTGGCAACTTCCAGTGGATTGCTGGGCCTTGCTATTAGTTTCACATCAATGTGGTTTTTGCATCAGACTGGACCTACAACATATAGTTTGGTGGGATCATTGAATAAGATTCCTATCTCACTCGCTGGGATATTGCTCTTTAAAGTTCCAATAAATGTTCCAAATTTATTCAGCATACTTTTCGGACTTTTCGCAGGAGTATTCTTTGCCAAGGCCAAAATGACGAAGTAA___ATTGAAGTGGCAGACAATATACTAAACTTAGAGTGTTGCATGTTGAAAAGGGCGGGGAATTTTAGAAATCCCATTCCCTGGTGCAGATCCTTTTTGTAGGATCTCTGATCTCTCAAATCGTCTTAATTATTGAATCACAGAAAGGTTTTCGGGCCTGTGAAAATTTCATTCATTGAATTGTTCACTTTGTGTGTGACTATTATCAATTAATCATGTGTCTTGAATGGGCTTCTGTGATAGTGCAATGTACAACAACCATTGGAAGCTTATCTTATGCTCTAATTGTAACTGAGCAATAAAGCAAATCTCTTTTACATAAGAAGGCATATCTATAGACAAAATACGTCCCAAATATGGACAGCAGAGAAATAGTATTGTCCTCCAGTGAAATTTTTATAATGAATCTCCCACTTAAATATGTCAAGCAGTCCTTGACTCTACTGCTGGAGATTAAAAAGATGTGGGAAGCAAAATAAATGGGCGTGGCACCTTTAACAGGTTGACAATTTTTTCGAGATGTCTCTACTTCCGAACTGGTGCAAGCCAGTTCTACTTTAATTATTTAATATTCATTTTCAATGCTAAATTTCGCATCTAGTGTCCTTATGGACAGACTCTTTGGATGCAACACACAAATCAAAGTCTTTTCAATGGCTCTGGTGTCGCAATCTCACATTTGTAATGCC

Fln Alignment:

Contig18805___DDFDVEDGKV-----EKDVERTVREHGFIKVRNQALISGLAYCLSSCSMILLNKVVLSGYNLDAGISLMFYQSLVSVAVVYALTLFGIITTEPFTWNLVRVWIPVNIIFVGMLVTSNFSLKYINIAMLTILKNVTNIITALGEMYLFKKHQNNKVWAALIFMVISAISGGITDLSFHVVGYAWQIVNCFLTAAYSLTLRRVMDVAKQQTKSGNLNEFSMVXXXXXXXXXXXXXXIIVSNEWEYLYSSPVLRIPVFWVVATSSGLLGLAISFTSMWFLHQTGPTTYSLVGSLNKIPISLAGILLFKVPINVPNLFSILFGLFAGVFFAKAKM
Q941R4________________DGVDLEDGKTVKSGGDKPIPR--------KIHNRALLSGLAYCISSCSMILVNKFVLSSYNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMKVWFPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNAVGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFFNEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSIAGIVLFNVPTSLQNSASILFGLVAGVVFARAKM

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
98		25		75	0.996473
99	75		25		0.996473
102	75		25		0.996473
103	75			25	0.996473
104			25	75	0.996473
107	75	25			0.996473
110	75		25		0.996473
112		25		75	0.996473
114	75		25		0.996473
115	75			25	0.996473
119	75	25			0.996473
120	75			25	0.996473
123	75			25	0.996473
124	75			25	0.996473
127	75	25			0.996473
133	25			75	0.996473
196		80		20	0.995493
317	85	14			0.993533
325	85	14			0.993533
327		85		14	0.993533
328	85			14	0.993533
332		85		14	0.993533
333		85	14		0.993533
335		14		85	0.993533
337		14		71	0.984337
339		14		85	0.993533
340	14	85			0.993533
369	85		14		0.993533
370			85	14	0.993533
372	85		14		0.993533
376		14		85	0.993533
378		85		14	0.993533
385	85	14			0.993533
387		14		85	0.993533
388	85			14	0.993533
389	85	14			0.993533
409	85	14			0.993533
410	85		14		0.993533
411		14		85	0.993533
452		10		90	0.999898
460	10		90		0.999898
467			10	89	0.999919
468		10	89		0.999919
470	68		31		1.0
474	10	89			0.999919
480		84		5	0.999846
507	93		6		0.999364
510		93	6		0.999453
517	93	6			0.999453
518	93			6	0.999453
519		93	6		0.999453
520		93		6	0.999453
521		6		93	0.999453
522	6			93	0.999453
523		6	93		0.999453
525	93	6			0.999453
526	6	90		3	0.997544
529		6	93		0.999264
532	6			93	0.999264
537			6	93	0.999264
852	87			12	0.992554
853	87			12	0.992554
855	85		14		0.993533
857	85	14			0.993533
1026			85	14	0.999981
1064	88		11		0.999937
1067	88			11	0.999937
1072			88	11	0.999937
1075		90	9		0.999842
1078	86		13		1.0
1079		86		13	1.0
1080	86	9	4		0.999642
1083	86	4			0.999642
1085	86	4			0.999642
1158		7		92	0.999532
1161			7	92	0.999602
1162		92		7	0.999602
1163		92	7		0.999602
1165	92	7			0.999602
1166	92	7			0.999602
1169			7	92	0.999602
1170	92	7			0.999602
1175			92	7	0.999602
1358	81	6		12	0.999943
1359	81	12	6		0.999943
1360		6	12	81	0.999943
1361		13		86	0.999973
1386	5		82		0.999919
1387		88	11		0.999952
1723		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain