SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18800

Length: 595 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18800

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15891	9/12
SustainPine v2.0	sp_v2.0_unigene64179	3/12

Source	Descriptions	Term	Type	Identity
AutoFact	cullin 1-like protein C [Petunia integrifolia subsp. inflata]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
64		66	33		0.997452
65	33		33	33	0.997753
68	33		33	33	0.997753
69	66			33	0.997452
78	66	33			0.997452
80			33	66	0.997452
84	66	33			0.997452
85			66	33	0.997452
86		33	66		0.997452
87	33	66			0.997452
192		16		83	0.994512
195			16	83	0.994512
198	16			83	0.994512
199	83	16			0.994512
201	83			16	0.994512
202	83		16		0.994512
208	16			83	0.994512
209		16		83	0.994512
211	83	16			0.994512
250		90	10		0.90298
252	90	10			0.90298
255	10			90	0.90298
256		10	90		0.90298
261			10	90	0.90298
262	90	10			0.90298
264			10	90	0.90298
267		10		90	0.90298
269		10		90	0.90298
271	90	10			0.90298
272	10			90	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain