SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18739

Length: 1372 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18739

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26217	28/70
SustainPine v2.0	sp_v2.0_unigene32776	34/70

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein Rab11A n=5 Tax=Papilionoideae RepID=RB11A_LOTJA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	gtp-binding protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNS1

Fln msg:

Fln protein: MDMNPKIDYVFKVVLIGDSAVGKSQILSRFARDEFSLDSKATIGVEFQTRTVVIDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVPRWLEELRNHADNNIVIMLVGNKCDLENLRAVPTEDAKEFAQKEGLFFLETSALEATNVETAFLTVLTEIFKIVTKKSLIASQDQGNGNHTSLSGTSIVVSGQEQDSTTKKKSCCTSA*

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACAATACACATACATAGACACATTTCTATATCTGTGACTTTCGGCTCCTCCGCCTGAACAGCGCCTCCGAAGCAACCCTTCTTTTGGGCAAAATAGGGAGAAGGCAGGATATCGGCGCGAGATCTGCCATTGTTCCAGCCGGAGTTTTCCCTGCTGCCGCCAAATTTCGGAAAGCTTGGAGATCGATTTGGCGGAAGAGCGCAAGCATTTGTTAGTTCTCAGGTGAAAAGTTAAAGAATCAGGAAGGC_-_ATGGATATGAATCCGAAAATAGATTATGTGTTCAAGGTAGTCCTGATTGGAGATTCTGCAGTGGGGAAATCCCAGATCCTGTCCAGGTTTGCTAGAGATGAGTTCAGTTTGGATTCCAAGGCCACAATAGGAGTGGAGTTCCAGACCAGGACTGTTGTCATAGACCACAAGTCTGTTAAAGCACAGATATGGGATACTGCTGGGCAGGAGAGATACAGAGCAGTGACAAGTGCTTACTACAGAGGTGCTGTTGGGGCCATGTTGGTGTACGATATAACTAAGCGTCAAACATTTGATCATGTGCCTCGATGGCTTGAAGAATTGAGAAACCATGCTGACAACAACATTGTTATTATGCTGGTAGGCAACAAATGTGATCTCGAGAACCTACGTGCAGTGCCTACAGAGGATGCAAAAGAATTTGCACAGAAGGAAGGCTTATTTTTCTTAGAAACATCAGCCTTGGAAGCAACAAATGTGGAGACTGCATTTTTAACTGTTTTGACAGAGATTTTCAAGATAGTCACCAAAAAGTCTCTTATTGCAAGTCAGGATCAAGGCAATGGAAATCACACCTCATTATCAGGCACTTCGATTGTTGTTTCAGGGCAAGAGCAGGATTCTACTACAAAAAAGAAGAGCTGTTGTACATCTGCGTAA___TTTGTACAATTATTACGAATTTCTCTTTTTACCAGTTTCAATCTTCGCATCATTTTTTTTCCTACCTTCACAACAGCATCGATTGTTGTTCTCTATTTTCCAGCTAGATTAGAGAGAAAACAATTAGATATATCTTTGTCCTGGTTACATCCATTGTTTCAAGTTTGATGTGTGTTAATTTTAAAATTTTGGAACAGAATATAAATTTCGTTCCTGTAATTTGGAATTTTAATCTCCATAGCCAATGTGGCTATGGAGAATTTGTGTAGCTGCAGATTGGACTTGAAACTTGTTATCTTTTCCTAAATTATAGAGAAAAGAAGCAAACATTAGTATTCATTTTTATTCCATCCTATTTTAGATCTGTTGACCTGCATTCCCCCTCTTTTGGTGAAGAAGCTGAGTCTTATATTACAAGCTTACAAAATATCACATGCC

Fln Alignment:

Contig18739___MDMNPKIDYVFKVVLIGDSAVGKSQILSRFARDEFSLDSKATIGVEFQTRTVVIDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVPRWLEELRNHADNNIVIMLVGNKCDLENLRAVPTEDAKEFAQKEGLFFLETSALEATNVETAFLTVLTEIFKIVTKKSLIASQDQGNGNHTSLSGTSIVVSGQEQDSTTKKKSCCTSA
A9NNS1________________MDMNPKIDYVFKVVLIGDSAVGKSQILSRFARDEFSLDSKATIGVEFQTRTVVIEHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVPRWLEELRNHADNNIVIMLVGNKCDLDNLRAVPTEDAKEFAQKEGLFFLETSAMEATNVETAFLTVLTEIFKIVSKKSLIASQDQGNGNHASLSGTSIVVPGQEQDTTTKKKSCCTSA

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
340	75	25			0.996473
343		25	75		0.996473
345			75	25	0.996473
348	75	25			0.996473
349	75			25	0.996473
351		75	25		0.996473
352		75	25		0.996473
354	75			25	0.996473
362		25		75	0.996473
363	12	87			0.992554
364		62	12	25	1.0
365	75			25	1.0
366		25	75		1.0
368		12		87	0.992554
369			14	85	0.993533
370	14			85	0.993533
371		14	85		0.993533
374	85			14	0.993533
378	85	14			0.993533
381	85	14			0.993533
382	14		85		0.993533
383		14		85	0.993533
487	50		50		1.0
552	80			20	0.995493
553		20		80	0.995493
554	80		20		0.995493
557	80	20			0.995493
560	80			20	0.995493
561	80		20		0.995493
568	80	20			0.995493
569	80			20	0.995493
603		16		83	0.994512
605	83	16			0.994512
607	83			16	0.994512
608	83		16		0.994512
612	83			16	0.994512
618	83			16	0.994512
623	83			16	0.994512
624	83	16			0.994512
625	16	83			0.994512
706	75			25	0.996473
708	75		25		0.996473
709			75	25	0.996473
710	75		25		0.996473
712		25	75		0.996473
713		25	75		0.996473
714	75			25	0.996473
715	75			25	0.996473
723	25			75	0.996473
736	80		20		0.995493
739	80			20	0.995493
747	80	20			0.995493
748	80			20	0.995493
752	80			20	0.995493
756	80	20			0.995493
758		20	80		0.995493
759	20			80	0.995493
764	80		20		0.995493
803	81	12		6	0.999943
807	86		13		0.999973
808		86		13	0.999973
809		86	13		0.999973
811	86	13			0.999973
812	86	13			0.999973
813	86			13	0.999973
814	83	5		11	0.999887
816			11	88	0.999937
819		83	16		1.0
821		16		83	1.0
823		11		88	0.999937
827	83	5			0.999887

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain