SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18722

Length: 1096 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18722

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7523	59/83
SustainPine v2.0	sp_v2.0_unigene63850	7/83
SustainPine v2.0	sp_v2.0_unigene78575	2/83
SustainPine v2.0	sp_v2.0_unigene79482	6/83
SustainPine v2.0	sp_v2.0_unigene79822	1/83

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 variant 1C n=3 Tax=Eukaryota RepID=D3PJZ2_9MAXI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ubiquitin-conjugating enzyme spm2	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	post-translational protein modification	GO:0043687	Biological Process	92%
Blast2go	postreplication repair	GO:0006301	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	92%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 86)

Position	A %	C %	G %	T %	Probability
277	88	11			0.923564
397		25	75		0.996473
401		75	25		0.996473
403		75	25		0.996473
407	75	25			0.996473
410		75	25		0.996473
412		25	75		0.996473
418		25	75		0.996473
421		25	75		0.996473
422			75	25	0.996473
423		25	75		0.996473
424	25	75			0.996473
490		20		80	0.995493
493		20		80	0.995493
494		80	20		0.995493
496		80	20		0.995493
497	20		80		0.995493
498		20	80		0.995493
499		20	80		0.995493
501		72	18	9	0.999994
503	63	9	27		1.0
506	63		18		0.999997
508		27	72		1.0
517		18		81	0.999994
519	81	18			0.999994
525	78	21			1.0
527	78			21	1.0
529			21	78	1.0
530			78	21	1.0
534			80	20	1.0
537		20		80	1.0
545	86	13			0.999973
546	80	6		13	0.999961
547		14	78	7	0.999974
548	14	85			0.999981
572	82	17			1.0
574			82	17	1.0
580		12	81		0.999943
582	81	6		12	0.999943
583			12	87	0.999964
584	81		12	6	0.999943
585		91	8		0.999807
586	60		30	8	1.0
587	60	8	8	21	1.0
588		21		78	1.0
589		8	91		0.999807
591	8	4	82	4	0.999136
592	86	13			1.0
593	65	21		13	1.0
594		39	60		1.0
595	73			26	1.0
596	4	73		21	1.0
597	4	4	21		1.0
598	78		21		1.0
599		21		78	1.0
601		72	22	4	1.0
606	77			22	1.0
608	15		11		1.0
609	88			11	1.0
610		11		88	1.0
611			11	88	1.0
615	88	11			1.0
616	88	11			1.0
617	88			11	1.0
618			88	11	1.0
619	88		11		1.0
621	88	11			1.0
622	88			11	1.0
623	88		11		1.0
625	11		88		1.0
628		3	88		0.999079
629	3	7	88		0.999079
630	7	92			0.999664
679		8	86	5	0.999998
681	91			8	1.0
682	86	13			1.0
683		5	94		0.998578
685			8	91	1.0
686	8		91		1.0
687		8	5	86	0.999998
690			5	94	0.998578
691	86	5	5	2	0.956602
692		2	5	91	0.99441
693	88	8	2		0.999999
695		2	5	91	0.99441
698	5			94	0.998578

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain