SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18710

Length: 2038 nt

UniGene Fasta

>uagpf_v2_unigene18710
CGTCGTGACCTTGGCTGTCACTCAGGGCAGCGGACGGGGCACTGCGCCATTATATTATTGCACAGCAATAACAGAAAGGAAAAATCATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACCGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGCGAGGCTGAGAGGCGTATTATGGGCAAAGAAAACATGGAATATCTACCCATGGGAGGAAGTGTGAAGATGGTTGAAGATTCTATCAAACTTGCATATGGAGAAAATGCAGATGTCTTGAAAGATAAGCGTGTTGCAGCTGTCCAAGCTCTATCTGGCACTGGCGCTTGCCGTCTTTTTGCAGAGTTCCAGAAACGGTTTCGACCCGAGTCTCAGATTTACATACCAGTCCCTACCTGGGCCAATCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGAATGCTCCCAATGGTTCCTTTTTCTTGCTTCATGCATGTGCTCACAATCCCACAGGTGTAGATCCAACAGAGGAGCAATGGAAGGAAATTTCTTATCAATTTAAGGTGAAAAATCACTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGTGACACGGACAGAGATGCTAAGGCAATCAGGATATTCTTGGAGGATGGTCACCAGATTGCATGTGCACAGTCTTTTGCAAAAAACATGGGCTTGTATGGACAGAGGGTAGGTTGTCTAAGTGTTATATGCGATGATGCAAAACAGGCAGTGGCAGTTAAGAGCCAGCTTCAACAGATTGCTCGGCCAATGTACAGTAATCCACCTGTTCATGGGCTCTTATTGTATCTTCCATCCTGAGTGATCCAGATCTCAAAGCTCTCTGGCACAAGGAGGTCAAGGTTATGGCAGACCGTATTATTGGAATGAGAGAATCTTTGCGAGGCAACCTTGAAAAGCTGGGGTCTCCTCTCAGTTGGAACCATGTTACTGAACAGATTGGAATGTTTTGCTATAGCGGTATGACTCCAGAGCAAGTTGACCGCTTGACGAGTGAATTTCACATTTATATGACACGAAATGGCCGCATAAGTATGGCAGGTGTTACTACCGGCAATGTTGAATACTTGGCAAATGCTATCAATGAGGTCACAAAGTCATCAGAAAAAGAGATGAAAGTTGGTGCAATTTAAATCTAATTTTTGGCAAACATCACAATTTTATTATTGCATCATCATATGAGAATTTTAGAGCTTAGTTTTATTTTTGTGCTAGTGCACCACCATCGGGGACACCTTTGAATAAGTAGCCTATTGTTTAGGCATAGTCATCAGCAAACTTAGTTTTTGTACTCCGTTTTAGGGGTACAGTAGGTTTCTCATGATAGTGTAGGATAAACGTTTGCTAGTGCACCACTATTGGAGATACCTTTGAATAATTGGCCTATTGTTTAGGCATAGTCATTAACAAAAATAGTTTTGTACTCCATTTAAGGGGTGCAGTCGGTTTCTCATGAAAGTGTAGGATACAGATTTGAGGTTTTTTTATGGACGTTTCCTTTTATGGTTGTATCCTGTCAAGAGGACAATTCACATACCTTTGTACTTTCCTTTCTCAAAAAGTGGGATGTTATTAAATTTTGAAGTTTTTTATTATCTTTTAGAAAATTGTGGTATTTTATTCTGTACCTGCTGTTCTCTATTTGTTGGCTAGAGCTGGAAACTATTCAGTGGTCACAAGAAGAGTGTCATGTCTAGGAGAGGAGAATGCAGATCTCCTTTTGAGTTGTTTGTTAATTCTGTTTAACCATAAAGGAGAATCAAGTTGATAATGATATCTATTCATTAGCC

Ace file of the UniGene uagpf_v2_unigene18710

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16326	98/103

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=1 Tax=Picea sitchensis RepID=A9NUJ0_PICSI	-	-	95%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	aspartate aminotransferase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	91%
Blast2go	Cysteine and methionine metabolism	00270	91%
Blast2go	Arginine and proline metabolism	00330	91%
Blast2go	Tyrosine metabolism	00350	91%
Blast2go	Phenylalanine metabolism	00360	91%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	91%
Blast2go	Carbon fixation in photosynthetic organisms	00710	91%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	91%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	91%
Blast2go	Biosynthesis of phenylpropanoids	01061	91%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	91%
Blast2go	Biosynthesis of plant hormones	01070	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	copper ion binding	GO:0005507	Molecular Function	91%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg: Overlapping hits, possible frame ERROR between 1034 and 1025,

Fln protein: MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRIMGKENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHxxxxxSSILSDPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI*

Protein Length: 433

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGCAGCGGACGGGGCACTGCGCCATTATATTATTGCACAGCAATAACAGAAAGGAAAAATC_-_ATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACCGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGCGAGGCTGAGAGGCGTATTATGGGCAAAGAAAACATGGAATATCTACCCATGGGAGGAAGTGTGAAGATGGTTGAAGATTCTATCAAACTTGCATATGGAGAAAATGCAGATGTCTTGAAAGATAAGCGTGTTGCAGCTGTCCAAGCTCTATCTGGCACTGGCGCTTGCCGTCTTTTTGCAGAGTTCCAGAAACGGTTTCGACCCGAGTCTCAGATTTACATACCAGTCCCTACCTGGGCCAATCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGAATGCTCCCAATGGTTCCTTTTTCTTGCTTCATGCATGTGCTCACAATCCCACAGGTGTAGATCCAACAGAGGAGCAATGGAAGGAAATTTCTTATCAATTTAAGGTGAAAAATCACTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGTGACACGGACAGAGATGCTAAGGCAATCAGGATATTCTTGGAGGATGGTCACCAGATTGCATGTGCACAGTCTTTTGCAAAAAACATGGGCTTGTATGGACAGAGGGTAGGTTGTCTAAGTGTTATATGCGATGATGCAAAACAGGCAGTGGCAGTTAAGAGCCAGCTTCAACAGATTGCTCGGCCAATGTACAGTAATCCACCTGTTCATxxxxxxxxxxxxxxxTCTTCCATCCTGAGTGATCCAGATCTCAAAGCTCTCTGGCACAAGGAGGTCAAGGTTATGGCAGACCGTATTATTGGAATGAGAGAATCTTTGCGAGGCAACCTTGAAAAGCTGGGGTCTCCTCTCAGTTGGAACCATGTTACTGAACAGATTGGAATGTTTTGCTATAGCGGTATGACTCCAGAGCAAGTTGACCGCTTGACGAGTGAATTTCACATTTATATGACACGAAATGGCCGCATAAGTATGGCAGGTGTTACTACCGGCAATGTTGAATACTTGGCAAATGCTATCAATGAGGTCACAAAGTCATCAGAAAAAGAGATGAAAGTTGGTGCAATTTAA___ATCTAATTTTTGGCAAACATCACAATTTTATTATTGCATCATCATATGAGAATTTTAGAGCTTAGTTTTATTTTTGTGCTAGTGCACCACCATCGGGGACACCTTTGAATAAGTAGCCTATTGTTTAGGCATAGTCATCAGCAAACTTAGTTTTTGTACTCCGTTTTAGGGGTACAGTAGGTTTCTCATGATAGTGTAGGATAAACGTTTGCTAGTGCACCACTATTGGAGATACCTTTGAATAATTGGCCTATTGTTTAGGCATAGTCATTAACAAAAATAGTTTTGTACTCCATTTAAGGGGTGCAGTCGGTTTCTCATGAAAGTGTAGGATACAGATTTGAGGTTTTTTTATGGACGTTTCCTTTTATGGTTGTATCCTGTCAAGAGGACAATTCACATACCTTTGTACTTTCCTTTCTCAAAAAGTGGGATGTTATTAAATTTTGAAGTTTTTTATTATCTTTTAGAAAATTGTGGTATTTTATTCTGTACCTGCTGTTCTCTATTTGTTGGCTAGAGCTGGAAACTATTCAGTGGTCACAAGAAGAGTGTCATGTCTAGGAGAGGAGAATGCAGATCTCCTTTTGAGTTGTTTGTTAATTCTGTTTAACCATAAAGGAGAATCAAGTTGATAATGATATCTATTCATTAGCC

Fln Alignment:

Contig18710___MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRIMGKENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGxxxVSSILSDPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI
A9NUJ0________________MAMAMAMSRSNAGRGIRLMSTSGWWKAVEPAPKDPILGVTEAFLADTDPNKVNVGVGAYRDDQGKPVVLQSVREAERRILGKENMEYLPMGGSVKMVEESIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDANVPQRTFHYYHPETRGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHYPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGxxxVYSILSDPDLKALWHKEVKVMADRIIGMREALRGNLENLGSPLSWNHVTDQIGMFCYSGMTPEQVDRLTSEFHIYLTRNGRISMAGVTTGNVEYLANAIHEVTKSSEKELKAGAV

SNPs (tot: 138)

Position	A %	C %	G %	T %	Probability
276		20		80	0.995493
278	80			20	0.995493
279	60	20		20	0.99255
280			80	20	0.995493
281			80	20	0.995493
282		20	80		0.995493
283	60		20	20	0.99255
284	60	20			0.99255
286		60		40	1.0
289		40	60		1.0
291	20		60		0.99255
292	20		80		0.995493
458		14		85	0.999981
459	85		14		0.999981
464	14		85		0.999981
469			84	15	0.999986
475			16	83	0.999991
476			75	25	1.0
478	18	81			0.999994
479		18	81		0.999994
535	90	10			0.90298
539		90	10		0.90298
540		90		10	0.90298
541			10	90	0.90298
542	90			10	0.90298
546			87	12	0.992554
551	87			12	0.992554
552	87		12		0.992554
668	75	25			0.996473
669	75		25		0.996473
671		25	75		0.996473
674			25	75	0.996473
675	25	75			0.996473
677		25		75	0.996473
679		11		88	0.923564
680		11	22	66	0.999999
681	11		11	77	0.968132
684	11		22		0.999999
686		11	88		0.923564
687	11	77			0.968132
688	11	11		77	0.968132
689		11		88	0.923564
691	88			11	0.923564
694		88	11		0.923564
695	88	11			0.923564
699	11		88		0.923564
906			75	25	0.996473
907		25	75		0.996473
908	25	75			0.996473
1006		28		71	1.0
1014	71		28		1.0
1016		28		71	1.0
1019		71		28	1.0
1020	71		28		1.0
1021		71	28		1.0
1029		16		66	0.988813
1030			33	16	1.0
1031		33	66		1.0
1032	16		66	16	0.988813
1033		16	83		0.994512
1034	20	80			0.995493
1074	71			28	1.0
1075	71		28		1.0
1077		28	71		1.0
1081		71	28		1.0
1082			28	71	1.0
1086			71	28	1.0
1111			85	14	0.993533
1210		25		75	0.996473
1220			80	20	0.995493
1221		20		80	0.995493
1222	80		20		0.995493
1229		80		20	0.995493
1230	80			20	0.995493
1236	80			20	0.995493
1240		16	83		0.994512
1244	14		85		0.993533
1246			14	85	0.993533
1252	85	14			0.993533
1253			85	14	0.993533
1256	85		14		0.993533
1257	85	14			0.993533
1259			14	85	0.993533
1264	85			14	0.993533
1265		14		85	0.993533
1266	14			85	0.993533
1278	87			12	0.992554
1279	87	12			0.992554
1280	87		12		0.992554
1283	12		87		0.992554
1286			87	12	0.992554
1287		87		12	0.992554
1288	87		12		0.992554
1289			12	87	0.992554
1290	87	12			0.992554
1291	87			12	0.992554
1294	87	12			0.992554
1295	12			87	0.992554
1296		12	87		0.992554
1297			87	12	0.992554
1368	83	16			0.994512
1370	83			16	0.994512
1371		16	83		0.994512
1372	83		16		0.994512
1377	83	16			0.994512
1378		16	83		0.994512
1387	83	16			0.994512
1389		16		83	0.994512
1390	16			83	0.994512
1409	80		20		0.999996
1410	60	20		20	0.999999
1412	75		12	12	0.999931
1414		87	12		0.999964
1415	56		25	18	1.0
1416		68		12	1.0
1417	62		12		1.0
1419		12		87	0.999964
1420		12	12	75	0.999931
1422		12		87	0.999964
1423	87		12		0.999964
1424		12		87	0.999964
1425		12		87	0.999964
1426	87		12		0.999964
1428		12		87	0.999964
1429	12		87		0.999964
1524	71	14	14		1.0
1526	76	9		14	1.0
1528			14	85	1.0
1529		90	9		0.999872
1530	76	4	14	4	1.0
1532		52	4	42	1.0
1533	90		9		0.999872
1536	73	4	4	17	1.0
1537	86	9	4		0.999642
1541		9	4	86	0.999642
1555		43		56	1.0
1557		6		93	0.999153
1655			93	6	0.999153

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain