SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18704

Length: 550 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene18704 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17599	4/11
SustainPine v2.0	sp_v2.0_unigene61638	5/11

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S0Z5_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	pyruvate dehydrogenase e1 beta subunit	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	87%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	87%
Blast2go	catalytic activity	GO:0003824	Molecular Function	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
356	88			11	0.923564
360	77		11		0.968132
381	81		18		0.999994
384	18		9	72	0.999994
387		20		80	0.999996
388	20		80		0.999996
390			20	80	0.999996
391	80		20		0.999996
395	80	20			0.999996
396			20	80	0.999996
397	20			80	0.999996
398		20		80	0.999996
423		87	12		0.992554
424	12	87			0.992554
425			12	87	0.992554
430	12			87	0.992554
431		12	87		0.992554
432	12			87	0.992554
436	12			87	0.992554
437	12		87		0.992554
438		87	12		0.992554
439	87		12		0.992554
442		12		87	0.992554
444	12		87		0.992554
445		12		87	0.992554
470		85		14	0.993533
474			14	85	0.993533
475		14	85		0.993533
476	85	14			0.993533
477	14			85	0.993533
478	14		85		0.993533
487			14	85	0.993533
489	85	14			0.993533
490			85	14	0.993533
491			16	83	0.994512
495		83	16		0.994512
496	16	83			0.994512
499	80		20		0.995493
505			20	80	0.995493
507		20		80	0.995493
508	20			80	0.995493
510		25	75		0.996473
513	25		75		0.996473
515	33		66		0.997452
517		66		33	0.997452
518	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain