SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18653

Length: 932 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18653

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17601	2/52
SustainPine v2.0	sp_v2.0_unigene21081	35/52
SustainPine v2.0	sp_v2.0_unigene21580	8/52
SustainPine v2.0	sp_v2.0_unigene61335	2/52

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport SEC13-like protein [Solanum tuberosum]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein sec13 homolog	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
125		10		90	0.90298
127	90			10	0.90298
131	90		10		0.90298
133	10		90		0.90298
134		90		10	0.90298
136	10		90		0.90298
170		3	89	7	0.998606
172		89	7	3	0.998606
175		89		3	0.998606
180	92			7	0.999602
181	88	7		3	0.998862
188		4		86	0.999539
203	94			5	0.998578
207	94		5		0.998578
215	5	94			0.998578
351			16	84	1.0
556	80			20	0.995493
557			80	20	0.995493
558	60	20		20	0.99255
559	60		20	20	0.99255
561			25	75	0.996473
566	33		66		0.997452
568			33	66	0.997452
579		33		66	0.997452
878	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain