SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18622

Length: 880 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18622

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7134	40/41

Source	Descriptions	Term	Type	Identity
AutoFact	Vesicle-associated protein 4-2 n=3 Tax=Arabidopsis RepID=VAP42_ARATH	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	vesicle-associated protein 4-2-like	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	81%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
16		33		66	0.997452
21		66	33		0.997452
23		66	33		0.997452
28	66			33	0.997452
29			66	33	0.997452
31	66		33		0.997452
32		33	66		0.997452
33	66			33	0.997452
125		16		83	0.994512
129	85			14	0.993533
131		14		85	0.993533
135	85		14		0.993533
136	85	14			0.993533
137	85			14	0.993533
140		14		85	0.993533
142	85	14			0.993533
143	85			14	0.993533
144		14	85		0.993533
159		81	18		0.999994
161	72	18			0.999994
163	72	9	18		0.999994
165	72			9	0.999994
166		18	81		0.999994
168		9	72		0.999994
171		18		81	0.999994
172	18		81		0.999994
315		73	26		1.0
318		73	26		1.0
319	73			26	1.0
323	73	26			1.0
324			73	26	1.0
325	73			26	1.0
326		73	26		1.0
327	73		26		1.0
387	90		10		0.90298
388	90			10	0.90298
389	90	10			0.90298
393		10		90	0.90298
401	90		10		0.90298
402	90			10	0.90298
408			90	10	0.90298
420		18	81		0.999994
441	87		12		0.999964
442	87			12	0.999964
445			13	86	0.999973
451		13	86		0.999973
453			13	86	0.999973
456	13		80		0.999961
457	86	13			0.999973
460	80			6	0.999961
464	14			85	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain