SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18586

Length: 1251 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18586

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23605	57/64
SustainPine v2.0	sp_v2.0_unigene79601	1/64

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG2273 Beta-glucanase/Beta-glucan synthetase	-	-	1.0e-10	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM96

Fln msg:

Fln protein: MKSSAKFLRFGMSFRESSPVLILILILIPFLSLVESSNFNDDFEILWGTVRLLDNNQTAQLTMDRSSGSGFQSKNEYLFGSMSMSIKLIQGNSAGTVTTFYMSSDEASHDELDFEFLGVVPGQPYTLQTNVFANGIGNREQRINLWFDPTVAFHNYSILWNHKQIVFWIDSIPIRVFKNIEESAGIPYPSTRPMRIHASLWNGEKWATEGGKVKIDWSKAPFVPLGCHSFQVNGCSAPSNSSAPCANNWWEQPEFGTLNQQQLSKLDWVRKNYLTYDYCEDRSGRFSSTPAECAVNP*

Protein Length: 299

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAGCTTGTTTGTCGGAGGTGCAGTACCCTGCTACAGGAAAGGGAAGCGCAAGTTCGACAATCCAGGCTTTCGATAACAGCACCAGCA_-_ATGAAGAGCTCTGCAAAGTTTTTAAGATTTGGAATGTCTTTTCGAGAGTCCAGTCCAGTCCTGATTCTGATTCTGATTCTGATTCCGTTTCTATCCTTGGTAGAATCCTCCAATTTCAACGACGATTTCGAAATCTTATGGGGAACCGTTAGATTGTTGGATAATAACCAAACAGCTCAGCTCACTATGGATCGATCTTCAGGTTCTGGTTTTCAGTCCAAAAATGAATACCTCTTTGGCAGTATGAGCATGAGCATTAAGCTGATCCAAGGGAATTCGGCTGGAACAGTCACTACCTTTTATATGTCATCGGACGAGGCTTCCCACGATGAACTTGACTTCGAATTTCTGGGAGTTGTGCCAGGACAGCCTTACACTCTACAAACCAACGTCTTTGCTAATGGGATCGGGAATAGAGAGCAAAGAATTAATCTCTGGTTTGATCCCACGGTCGCTTTCCATAACTATTCAATTCTTTGGAACCACAAACAAATCGTGTTTTGGATTGATTCTATCCCCATCCGGGTGTTCAAGAACATTGAAGAATCTGCGGGTATCCCATATCCAAGTACTCGACCCATGAGGATCCACGCCAGCCTTTGGAACGGGGAGAAATGGGCCACCGAAGGAGGAAAGGTTAAAATAGATTGGAGTAAAGCTCCCTTCGTGCCTCTTGGCTGTCACTCGTTTCAAGTGAATGGATGCAGCGCGCCATCTAATTCATCTGCTCCCTGTGCCAACAATTGGTGGGAACAACCGGAATTTGGAACCCTAAATCAACAGCAACTCAGTAAACTTGATTGGGTTCGCAAAAACTACCTCACGTACGATTACTGTGAAGATAGATCAGGGCGGTTTTCTTCAACTCCAGCTGAATGTGCAGTTAATCCTTAG___TCAATCACGGTGGTTGATAACAATAACAATATTGATTACAATATTGCAGGTTTAGAGATTCATCCAGAATGATTAATCTCTATTATGATATTTATTTGAGAATAATTGGAATGTAGAAATATTTTGTGTGGACAAAAGCTGGTTAATTCTTCGCCTTGTTTTCCTCTTAAATGGAATATGGTCAGCGCCCACATGGATGTACGAAGCCCACAAAATACAGGGAAGGCAAACGCTCTATTATATAC

Fln Alignment:

Contig18586___MKSSAKFLRFGMSFRESSPVXXXXXXXXPFLSLVESSNFNDDFEILWGTVRLLDNNQTAQLTMDRSSGSGFQSKNEYLFGSMSMSIKLIQGNSAGTVTTFYMSSDEASHDELDFEFLGVVPGQPYTLQTNVFANGIGNREQRINLWFDPTVAFHNYSILWNHKQIVFWIDSIPIRVFKNIEESAGIPYPSTRPMRIHASLWNGEKWATEGGKVKIDWSKAPFVPLGCHSFQVNGXXXXXXXXXXXXXXWWEQPEFGTLNQQQLSKLDWVRKNYLTYDYCEDRSGRFSSTPAECAVNP
A9NM96________________MKSSAKLLGFGIFSRELVYISSVVIL---ILSSVESSSFNDNFDISWGTVTMLNNGQTAQLTMDKASGSGFQSKKEYLFGIVSMRIKLVSGNSAGTVTSYYMSSDASSHDELDYEFLGNLPGKPYTLQTNVFANGVGNREQRIRLWFDPTAGFHNYSILWNHKQIVFWVDSIPIRVFKNNEEAAGIPYPNRRPMKILSTLWNGDSWATDGGRVKVDWDIAPFV-ASYQSFQVDACSVSSGSSLPCANNWWDQPEFQSLNQYQLRRIHWVRKHYMTYDYCHDTSGRFSAAPAECAFNP

SNPs (tot: 93)

Position	A %	C %	G %	T %	Probability
79		14	85		0.993533
80			14	85	0.993533
85		85		14	0.993533
86	85		14		0.993533
88		14		85	0.993533
90		85		14	0.993533
91	85			14	0.993533
96			14	85	0.993533
99	14		85		0.993533
100	85	14			0.993533
102	85	14			0.993533
125		90	10		0.90298
131	80	20			0.999996
134			11	88	0.923564
135			11	88	0.923564
136		11		88	0.923564
138	88		11		0.923564
139	88			11	0.923564
140		11	88		0.923564
142		11		88	0.923564
146		11	88		0.923564
488	81			6	0.999943
490	80		20		1.0
526	83	16			0.999991
527	83		16		0.999991
529	83	16			0.999991
531	83			16	0.999991
534		16	83		0.999991
536	83			16	0.999991
537	83			16	0.999991
538	83		16		0.999991
540	75	16			0.99999
541	83			16	0.999991
542			16	83	0.999991
544	83	16			0.999991
550	16			83	0.999991
566		11		88	0.923564
601	77		11	11	0.968132
602	77		11	11	0.968132
603	88	11			0.923564
604		87	12		0.992554
605	75			12	0.975346
606	75	12	12		0.975346
607	87			12	0.992554
608		12		87	0.992554
609		87	12		0.992554
610			87	12	0.992554
611		12		87	0.992554
614		12		87	0.992554
615		12		87	0.992554
616	12		12	75	0.975346
617		12		87	0.992554
618		12	75	12	0.975346
619	12	12	75		0.975346
620	87	12			0.992554
622		12		87	0.992554
623	12		87		0.992554
714	14			85	0.993533
717		14	85		0.993533
719	85	14			0.993533
779			14	85	0.993533
786	14	85			0.993533
787		85	14		0.993533
789		85		14	0.993533
790			14	85	0.993533
792		14	42		1.0
793	57		42		1.0
796	66	16			0.988813
799	66		16		0.988813
802		83	16		0.994512
803	33		66		1.0
805		16		83	0.994512
806			16	83	0.994512
807		16		83	0.994512
808	16	83			0.994512
810	83	16			0.994512
811			83	16	0.994512
812		16		83	0.994512
813	16		83		0.994512
823	90		10		0.90298
824			90	10	0.90298
827		90		10	0.90298
831	90			10	0.90298
833		90	10		0.90298
834			10	90	0.90298
835	90	10			0.90298
836	90			10	0.90298
837			10	90	0.90298
844		10	90		0.90298
845	10	90			0.90298
876			62	37	1.0
1159	80	20			0.995493
1160			20	80	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
159	173	AGTCC AGTCC AGTCC	15
173	197	CTGATT CTGATT CTGATT CTGATT C	25

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain