SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18576

Length: 1727 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18576

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15349	38/80
SustainPine v2.0	sp_v2.0_unigene16439	34/80
SustainPine v2.0	sp_v2.0_unigene22441	6/80

Source	Descriptions	Term	Type	Identity
AutoFact	Alternative oxidase n=1 Tax=Picea sitchensis RepID=A9NRS5_PICSI	-	-	66%
FL-Next	sp=Alternative oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	alternative oxidase	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	cellular respiration	GO:0045333	Biological Process	84%
Blast2go	response to cold	GO:0009409	Biological Process	84%
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	84%
Blast2go	alternative oxidase activity	GO:0009916	Molecular Function	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alternative oxidase	IPR002680	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRS5

Fln msg:

Fln protein: MASSRLSSMVIRNLIARPQGLVPNGAQSVFILGRILFSGQGTGTARSHGSASLGTGGDANYYRVLPWD*DVFTGVLKRAELNSGSYWNLSPFVLTRSASTVAGKVAVDDQIETAGGAVKVMEAEKITGKEDEAAIDNPPEHEMEKLKDKGLVYSRYWGVSPSKVSRKDGSSWPWNSFRPWETYTPDLSIDLKKHHVPTTFLDKFAFWTVKSLRFPTDLFFQRRYGGRAMMLETVAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFTVQGIFFNAYFLMYILSPKLAHRITGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDYWRLPKDSTLRDVVVVVRADEAHHRDVNHFASDIHYQGKELREAAAPIGYH*

Protein Length: 405

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTGTCCAAGCTTTCTGTCTGTGTTTTCTTTTGATTATTTATTGCTGTTTCCGCATTTCTTCAAAAGTACAGAGGTGTCTTCAAATATTGTCTGCAAATTCATTCAAGTGAGAGAACAGTGGAAAAGGAATTCGCTGCTGCCAGCG_-_ATGGCTTCTTCAAGGCTTTCGTCCATGGTGATAAGAAATCTGATTGCAAGGCCCCAAGGCCTTGTTCCTAACGGGGCGCAGAGTGTATTTATCTTGGGCAGGATCCTCTTCAGCGGCCAAGGAACTGGTACTGCGAGGTCTCATGGCAGCGCGTCTCTGGGAACCGGTGGGGATGCTAATTATTATCGTGTCCTTCCCTGGGACTGAGATGTTTTTACTGGAGTCCTGAAGAGGGCAGAATTGAATTCAGGATCATATTGGAATTTGTCACCCTTTGTGTTGACGAGATCAGCAAGTACTGTTGCTGGGAAGGTTGCGGTCGATGATCAAATTGAGACTGCTGGTGGTGCTGTTAAGGTCATGGAGGCCGAGAAAATTACTGGAAAAGAAGACGAGGCTGCGATCGACAACCCCCCTGAGCATGAGATGGAGAAATTGAAGGACAAGGGATTGGTCTATTCTAGATACTGGGGGGTTTCTCCTTCCAAGGTCTCTCGGAAAGATGGATCGTCGTGGCCATGGAATTCATTCAGACCCTGGGAAACATACACTCCAGACTTGAGCATTGACTTGAAGAAGCATCACGTTCCAACGACATTTCTTGACAAGTTTGCTTTCTGGACTGTAAAGTCACTTAGATTTCCAACGGATTTGTTCTTTCAGCGGCGATATGGTGGCCGAGCCATGATGCTGGAAACAGTGGCTGCTGTCCCAGGGATGGTTGGAGGAATGCTCCTCCACTGCAAGTCCCTCAGAAAATTTCAGCACAGTGGTGGATGGATAAAAGCTCTTTTAGAAGAAGCTGAGAATGAGAGGATGCACCTCATGACATTTATGGAGGTGGCAAAACCCAAGTGGTATGAGAGGGCCTTGGTCTTTACAGTGCAAGGAATCTTCTTCAATGCATACTTCCTCATGTACATCCTTTCCCCCAAACTTGCACACAGGATTACGGGTTATCTTGAAGAAGAAGCTATCCACTCCTACACTGAATTTCTCAAGGAGCTGGACAAAGGCAACATTCCAAACGTGCCAGCCCCTGCTATAGCTATAGATTACTGGAGGCTTCCCAAGGATTCAACTCTCAGAGATGTGGTTGTGGTAGTTAGGGCTGATGAGGCGCACCATCGCGACGTCAACCACTTTGCATCAGACATTCATTACCAAGGAAAAGAACTGAGGGAAGCTGCAGCTCCAATTGGTTACCATTAA___ACTCAGGGCTCTATATTTTTGCACGAAAATATGCTTTTCTGTTAAGCCGCAGTGGAACTGTTCAACCCATGTCTATATACATATGGTATTTACTATTAGCTTGTGTATTAGAATTTGGTACCATAGAATATATGGATATCATAGGACAGGTTTGAAATCGGAGGGATAATGGACCATTCTTTCCCTTATTTTGACTGTGGAGTTTTTTAACTGTGAAATGTAGACCCTATCATTCCATTTCCATAAAAGTATATATAGATATCTGAGGAATACAGAGCTTCGGCTTATGGCACATATTAGCAAAATTTTCAAGGTAATGTTCTTTCAAGTTAATCTTCTAGAC

Fln Alignment:

Contig18576___MASSRLSSMVIRNLIARP-QGLVPNGAQSVFILGRILFSGQGTGTARSHGSASLGTGGDANYY---RVLPWD*DVFTGVLKRAEL-NSGSYWNLSPFVLTRSASTVAGKV-AVDDQIETAGGAVKVMEAEKITGKEDEAAIDNPPEHEMEKLKDKGLVYSRYWGVSPSKVSRKDGSSWPWNSFRPWETYTPDLSIDLKKHHVPTTFLDKFAFWTVKSLRFPTDLFFQRRYGGRAMMLETVAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFTVQGIFFNAYFLMYILSPKLAHRITGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDYWRLPKDSTLRDXXXXXRADEAHHRDVNHFASDIHYQGKELREAAAPIGY
A9NRS5________________MAFPRLSSMVVRNLIARRHQGLAPSRAGSEFIVGRFLYSGHGAAPARINSNSSLGAS-EAGYYVSSRVLY----EFT-VTKRGELYKQGSYWNASSFVSARSASNASGKTHRIDDVFESADAGVTGIEKNNINEKKAETAISKP---NTEKLKEIGLPHSSYWGFYPTQISRQDGSPWPWNSFRPWETYTPNMSIDLKKHHVPKTFADKFAYWTVRAMRIPVDLFFKKRYDIRVMMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHLMTFMEVTKPNWFERALVFAVQGVFFNTYFLVYIISPKLAHRIVGYLEEEAVYSYTEFLKELDNGNIPNGPAPAIAIDYWRLPKDSTLRDVVMVVRADEAHHRDVNHFASDIHFQGRELREAAAPLDY

SNPs (tot: 115)

Position	A %	C %	G %	T %	Probability
56		33		66	0.997452
57			33	66	0.997452
59		33	66		0.997452
60	66		33		0.997452
62			33	66	0.997452
64		33		66	0.997452
65		33		66	0.997452
69			33	66	0.997452
77		33		66	0.997452
80	33	66			0.997452
81	33		66		0.997452
82		66		33	0.997452
83	66			33	0.997452
315		75		25	0.996473
353	75	25			0.996473
359		33		66	1.0
360	66		33		1.0
364		28		71	1.0
366	28			71	1.0
367		57		42	1.0
368		71	28		1.0
370			28	71	1.0
371	28	42	28		1.0
372		71	28		1.0
374	42			57	1.0
375			71	28	1.0
376			71	28	1.0
377		28	71		1.0
381		28	71		1.0
382	71			28	1.0
383		28	71		1.0
387		28	71		1.0
388	28			71	1.0
409		12	87		0.992554
411			87	12	0.992554
413	87			12	0.992554
416	87	12			0.992554
420	87		12		0.992554
421	87	12			0.992554
428	87	12			0.992554
525	15		84		0.999986
526		76		23	1.0
542	54		45		1.0
544		81	18		0.999994
587	25	75			1.0
605			80	20	0.995493
612			25	75	0.996473
620		25	50	25	0.995533
631		25		75	0.996473
638	25			75	0.996473
747		16		83	0.994512
762	50		50		1.0
779			20	80	0.995493
803	75		25		0.996473
845	75		25		0.996473
852			75	25	0.996473
853			25	75	0.996473
859		25		75	0.996473
890	75		25		0.996473
904		75	25		0.996473
1019		20		80	0.995493
1021			80	20	0.995493
1024	80		20		0.995493
1025	80			20	0.995493
1026	80		20		0.995493
1030		80		20	0.995493
1031	80			20	0.995493
1032	66		16		0.988813
1036			83	16	0.994512
1037		16		83	0.994512
1040		16	83		0.994512
1057	16			83	0.994512
1094			12	87	0.992554
1097		87	12		0.992554
1100	58	8	8		1.0
1104		25	16		1.0
1112			10	90	0.90298
1115	10	90			0.90298
1117		90		10	0.90298
1130		83		16	0.999991
1134	50	8	33	8	1.0
1139			81	18	0.999994
1140		18	81		0.999994
1141	18		81		0.999994
1163		75		25	1.0
1206	85		14		0.999981
1208		14		85	0.999981
1209		85	14		0.999981
1210		85		14	0.999981
1211	80	6	13		0.999961
1213	80	13		6	0.999961
1215			86	13	0.999973
1218	6	80	13		0.999961
1220	80	6		13	0.999961
1222		80		20	1.0
1224	13	80	6		0.999961
1228	6	73		20	1.0
1229	13			86	0.999973
1265	88		11		0.999952
1266	88			11	0.999952
1269	11	88			0.999952
1270		11		88	0.999952
1272	88			11	0.999952
1273			88	11	0.999952
1274	88		11		0.999952
1276	88	11			0.999952
1280	9	4	85		0.999726
1281		9	90		0.999872
1295		9	90		0.999872
1370	83		16		1.0
1428	81		18		0.999994
1485	90	6			0.997544
1507	38		61		1.0
1597			66	33	1.0
1603		25	75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain