SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18495

Length: 1793 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18495

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10642	121/125
SustainPine v2.0	sp_v2.0_unigene78267	1/125

Source	Descriptions	Term	Type	Identity
AutoFact	tobamovirus multiplication protein 3 [Arabidopsis thaliana] dbj\|BAB64308.1\| TOM3 [Arabidopsis thaliana] gb\|AAC97216.2\| expressed protein [Arabidopsis thaliana] dbj\|BAC41898.1\| unknown protein [Arabidopsis thaliana] gb\|AEC05557.1\| tobamovirus multiplicatio	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	tobamovirus multiplication 1 homolog	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	viral replication complex formation and maintenance	GO:0046786	Biological Process	0.0	85%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1084	IPR009457	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQF7

Fln msg:

Fln protein: MTEAFVQGAMDWWVDVNNSNGWQDRIFYTLSGLYGLVAAVALIQLIRIELRVPEYGWTTQKVFHFLNVVVNGVRCVVFIFRRSVQYIKPAILLHVLLDMPGLLFFTTYTLLVLFWAEIYYQARAISVDGYRPAFITINGIIYLIQICIWIYSWWSPSPVVEILSKLFFAGVSFFAALGFLLYGGRLFFMLRRFPVESTGRRKKLQEVGYVTTICFTCFFIRCVMMFFSAFDKGANLDVLDHPILNFMYYLIVEIVPSSLVLIILRKLPPKRGTAHYHPIR*

Protein Length: 282

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCCATTTCTAAACCAGCAATTCTCTCTGATATCCCATGGTCCAAAGAAATTTTGCGCACTTTCTGCCAGTGGATTGCTACTTGATTTCACAATTGCCCATTAGATTCTAAATTATTTGGAGCCCTAAGGCCGAATCCAGAAACTCGGTAGAGGGAAAAGCCGCCAAATTCATCTGGGTTTGGTTTGAATCGATCTGGAATAGCACCCTTTTGTCGGATAAAGTCTTTTAGGTTCTCGCAGGGGAGCCTTGTTAAATACCGAGGAG_-_ATGACGGAAGCCTTTGTGCAGGGAGCAATGGATTGGTGGGTAGATGTAAATAATTCGAATGGTTGGCAGGACAGGATTTTCTACACGCTCTCCGGGCTCTACGGACTAGTTGCGGCAGTTGCTCTTATTCAACTTATAAGGATTGAGCTCAGAGTGCCAGAATATGGGTGGACAACGCAGAAAGTTTTTCATTTTCTTAATGTTGTTGTGAATGGAGTTCGGTGTGTTGTCTTTATATTTCGCCGAAGTGTGCAGTACATAAAACCTGCGATTTTGCTACATGTTTTGCTTGATATGCCTGGCCTGCTATTTTTTACCACGTATACTCTGTTGGTCTTATTTTGGGCAGAAATATACTATCAGGCACGGGCAATATCAGTAGACGGTTATAGACCCGCTTTTATCACAATCAATGGTATCATCTATCTCATTCAGATATGCATATGGATTTACTCTTGGTGGAGCCCTAGTCCAGTTGTTGAGATCCTCTCCAAGTTATTCTTTGCAGGTGTCTCCTTCTTTGCAGCGTTGGGGTTTTTACTTTATGGTGGCAGACTGTTCTTCATGCTTCGACGTTTTCCAGTTGAATCAACAGGACGCAGAAAGAAGTTGCAAGAGGTCGGCTATGTTACTACAATCTGCTTTACTTGTTTTTTCATAAGATGCGTCATGATGTTTTTCTCTGCATTTGACAAAGGTGCAAACCTTGATGTTTTGGATCATCCGATCTTGAACTTCATGTATTACTTGATAGTGGAAATAGTTCCATCTTCACTTGTTCTCATAATACTACGGAAATTGCCTCCAAAGCGTGGTACAGCTCATTATCATCCAATCCGTTGA___AGTCACAAATGGTTTCAAGGAAAACAGAGTTTCCTGATCATTTGCGAATTCCATATGCCAGTGCATATTATCAAGATCGTGGGGCGGAGTTGTGAAACTATACAGCAGTATGCTTAATGGTTGGGATGCACTTTCTATTGCTATTTTGGCCATCATGGCCTGAATGGAAGGTTTTAGCCATCATGGTCCTTAAGTTTGATATTGTAAAGTGATTGTGTCTTGTTAATAAAAGAGTATTATGTATTCTATTAAGATCAGCAACGGTGTGTTTCTCTTGAAGTTAGGGTCCTAGTTTGAGGCCTGCACTGTATCTTTTTCAAGGATTTTGTGTGGCCTTTAGATTAGTCTGAATGCAGGAGCTATCGTATTAGCCTGAAAAGTTAAATTGCATTTTCTCCTGTTTGAAAAAAAGATAGGTAGATATATTTCTAGTAATTAGTCTTACTGATGTTCTCCCTACAGTTTCTATGTTCAAAAGCTGCATTTCATTTTGGTCTTTTGTGAGCTGGTATATCAGGTTTCAGACACCAGCTATGACAATGCTTGCACAAACATATCCCATACTGCATGTAATTAACTTCTCTTATCAGGCTATTCGGCTGAATGCTGTCATGATTCTATGGTAACTTATATGTTGGCAGTCTGAAAATTTTAATAT

Fln Alignment:

Contig18495___MTEAFVQGAMDWWVDVNNSNGWQDRIFYTLSGLYGLVAAVALIQLIRIELRVPEYGWTTQKVFHFLNXXXXXXXXXXFIFRRSVQYIKPAILLHVLLDMPGXXXXXXXXXXXXXWAEIYYQARAISVDGYRPAFITINGXXXXXXXXXXXYSWWSPSPVVEILSKLFFAGVSXXXXXXXXXXXXXXXXXXXXXPVESTGRRKKLQEVGYVTTICFTCFFIRCVMMFFSAFDKGANLDVLDHPILNFMYYLIVEIVPSSLVLIILRKLPPKRGTAHYHPIR
B8LQF7________________MAEASVQGAMDWWVDVNNSNVWQDRIFYTLSGLYGFVAAVALIQLIRIELRVPEYGWTTQKVFHFLNVVVNGVRCVVFIFRRSVQYIKPEILLHVLLDMPGLLFFTTYTLLVLFWAEIYYQARAISVDGYRPAFMTINGIIYLIQICIWIYSWWSPSPVVEILSKLFFAGVSFFAALGFLLYGGRLFLMLRRFPVESTGRRKKLQEVGYVTTICFTCFFIRCVMMFFSAFDKGANLDVLDHPILNFMYYLLVEIVPSSLVLIILRKLPPKRGTAQYHPIR

SNPs (tot: 109)

Position	A %	C %	G %	T %	Probability
11			50	50	1.0
13		50	50		1.0
18	50			50	1.0
23		50		50	1.0
24	50		50		1.0
25	50		50		1.0
27	25			25	0.995533
29			50	50	1.0
34		20		40	1.0
35		40	20	40	1.0
38	40		20	40	1.0
39	80			20	0.995493
40	80		20		0.995493
43		77	22		0.999999
45	66	22		11	0.999999
47		66	11	22	0.999999
48	66	11	22		0.999999
49	88			11	0.923564
50		22	11	66	0.999999
51	13	13		73	0.999956
52		80		13	0.999961
54		80	20		1.0
55			20	73	1.0
57			13	86	0.999973
59	80			13	0.999961
60		13		86	0.999973
62	6	13		80	0.999961
63		86		13	0.999973
64		86		13	0.999973
65	13	86			0.999973
176		13	86		0.999973
179	86	13			0.999973
181	85			14	0.999981
183	13		86		0.999973
184		13	86		0.999973
185	86	13			0.999973
186	86			13	0.999973
187	86			13	0.999973
188	86		13		0.999973
191		86		13	0.999973
193		86		13	0.999973
263		12		87	0.999964
269	87			12	0.999964
462		14	85		0.993533
465		14	85		0.993533
468		85		14	0.993533
469	85		14		0.993533
472		14	85		0.993533
473		85		14	0.993533
474	85			14	0.993533
476	85		14		0.993533
477	85	14			0.993533
478	85			14	0.993533
481		20		80	0.995493
482	20			80	0.995493
483		20		80	0.995493
499		33		66	1.0
502		33		66	1.0
509	66			33	1.0
514	66			33	1.0
518	33			66	1.0
521		33	66		1.0
522	33		66		1.0
526			83	16	0.994512
559	62		37		1.0
562	62		37		1.0
563	62			37	1.0
564	62		37		1.0
569			62	37	1.0
570		62	37		1.0
572	62	37			1.0
574			37	62	1.0
576		37		62	1.0
577	37		62		1.0
580	62	12			1.0
581	12	87			0.992554
610	80	20			0.999996
611			20	80	0.999996
613		20		80	0.999996
614			20	80	0.999996
616			20	80	0.999996
620	80			20	0.999996
621		80		20	0.999996
623			20	80	0.999996
624	80	20			0.999996
627		80	20		0.999996
631	20		80		0.999996
632		20		80	0.999996
634		20	80		0.999996
635	20		80		0.999996
1258			13	86	1.0
1260	81	18			1.0
1261	86		13		1.0
1264		13	86		1.0
1265		13		86	1.0
1267			86	13	1.0
1270	86	13			1.0
1366		10	89		1.0
1367			14	85	1.0
1369	85	3	7	3	0.996721
1370	92		7		0.999532
1372	85	10	3		1.0
1374	85	7	3	3	0.996721
1375	85	3	3	7	0.996721
1376		7	89	3	0.998606
1377	89		3	7	0.998606
1401	93			6	0.999453
1765	10			90	0.90298
1790	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain