SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18459

Length: 1561 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18459

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3319	52/55
SustainPine v2.0	sp_v2.0_unigene81151	2/55

Source	Descriptions	Term	Type	Identity
AutoFact	putative xyloglucan glycosyltransferase 12 [Arabidopsis thaliana] sp\|Q9ZQB9.1\|CSLCC_ARATH RecName: Full=Probable xyloglucan glycosyltransferase 12; AltName: Full=Cellulose synthase-like protein C12; Short=AtCslC12 gb\|AAD15482.1\| putative glucosyltransfera	-	-	65%
FL-Next	tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine).	-	-	49%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	0.0	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A3QT95

Fln msg: your sequence is shorter than subject: 316 - 534

Fln protein: VVTLAVTQIEQQVSRVFINFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVQCLCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSKEIGFSKKANLIFLFFLLRKLILVFFSFTLFCIILPMTMFLPEAQLPSWVICYVPAIMSFFNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKLGRSSEADLVAFMEKESHPQLEHPRHHRGVSESGLDVLNKLSEQQQKQPFKKKANRLYRKELALAFRRETGCHSEFIVCSRNSFLLFTVSRGLFPPCWP*

Protein Length: 317

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCGAGCAGCAGGTTAGTCGTGTATTCATCAATTTCTTTGGTTTTAATGGGACTGCTGGTGTCTGGAGAATCAAAGCCCTTGAGGAGTCAGGGGGCTGGTTGGAAAGAACTACTGTGGAGGACATGGATATTGCTGTACGTGCTCACCTAAACGGATGGAAATTTATATATCTTAATGATGTTCAGTGCCTGTGTGAGCTACCGGAGTCTTATGAAGCATACCGAAAGCAGCAGCATCGATGGCATTCAGGTCCAATGCAGTTATTCCGGTTGTGTCTACCAGACATAATCCGTTCTAAGGAGATTGGTTTCTCGAAGAAGGCCAACTTAATATTCCTTTTCTTTTTGCTGCGAAAGCTCATTCTCGTTTTCTTTTCTTTCACTCTTTTCTGCATCATCCTTCCAATGACTATGTTTTTGCCAGAAGCTCAATTGCCATCTTGGGTCATATGCTATGTGCCGGCTATCATGTCATTCTTTAATATACTTCCTGCACCAAGATCGTTCCCTTTCATTGTTCCATATCTTCTCTTTGAAAACACAATGTCTGTAACAAAATTCAATGCCATGATCTCTGGGCTCTTTCAACTTGGCAGTGCTTATGAATGGGTGGTGACAAAAAAGTTGGGCAGATCATCTGAAGCTGATTTAGTTGCTTTTATGGAGAAGGAATCACATCCTCAATTAGAACACCCAAGGCATCATCGGGGTGTTTCAGAGTCAGGCCTTGATGTCCTCAACAAATTAAGTGAACAGCAGCAGAAACAACCCTTTAAAAAGAAAGCCAATCGGCTTTATAGGAAAGAATTGGCTTTAGCTTTTCGTCGTGAAACTGGCTGTCACTCGGAGTTTATTGTCTGCTCAAGGAATTCATTTTTACTTTTTACTGTTTCAAGGGGTCTCTTTCCTCCTTGTTGGCCTTGA___TTTGATTGGAGAGCAGGTTAGTTGAATTCCACAGCATAAAGCTTGGGCAACCTCTTTACAAATTGCCTTGCCTTGTAATGTTCTTTGACACTAACTGGAGACCTGATTTTAGGCCAAGATTCAAGTGAGCACAACTTTGAATAAATGTCGCTGCAGGCCTAGAAATTTCAGGGTATGGTTTTGCAGATGTATTAAGAAGTTGGAGATATGAATATAGCACTTGATCATGCAGGGTAATATGGTGATGACGGGATCCTGAAAAGTGGTTAAGTTTAAGCCATCACCCTTTTGGGGATTCAGAGTAACAGATATTTCACCAAATATTTGTATGTTTATTATGAAAGCAGCAGCCTTGTCATTCCAACGTCAAGTGTCACATTTTCATGGCTGAGTATGTTCACAAGAAGTGATTGTGCACGAAGATAATATTATTCTGGGGTCTATTTATGACTGTGCAAATCACAATGAGAGTCTGCTCTCGCGAATTGGTAATGCCCATAGATTGTTGCCTACGCATGCCTCTGATGTATCTTAGATTTCAGTGCTCCAGCATAATTCTTTATTGTCTTCCCTATTCTTGTGATTCTGGGTCAATTTTTTTTATTGGAAACA

Fln Alignment:

Contig18459___IEQQVSRVFINFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVQCLCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSKEIGFSKKANXXXXXXXXXXXXXXXXSFTLFCIILPMTMFLPEAQLPSWVICYVPAIMSFFNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKLG
A3QT95________________VEQEVGSATHAFFGFNGTAGVWRIKALNEAGGWKDRTTVEDMDLAVRASLRGWKFVFVGDLGVKNELPSTFKAYRYQQHRWSCGPANLFRKMVREIIANKKVSAWKKFHVIYGFFFVRKIVAHIVTFVFYCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVTEKLG

SNPs (tot: 121)

Position	A %	C %	G %	T %	Probability
25	66	33			0.997452
26	66		33		0.997452
30	66			33	0.997452
34		33	66		0.997452
37	66			33	0.997452
45	60	40			1.0
46	40	20	40		1.0
48		60	40		1.0
49	20		80		0.995493
52	40			60	1.0
53	60	40			1.0
54		40		60	1.0
56		60		40	1.0
57	60		40		1.0
58			40	60	1.0
60	60			40	1.0
61	60		40		1.0
63		40		60	1.0
64	40			60	1.0
67		40		60	1.0
68	40			60	1.0
71			20	80	0.995493
143		14		85	0.993533
146		14	85		0.993533
148	85			14	0.993533
150	14		85		0.993533
151	85	14			0.993533
153	85			14	0.993533
157	85	14			0.993533
159	85		14		0.993533
161		14		85	0.993533
162	14		85		0.993533
165		14	85		0.993533
166	14			85	0.993533
242		33		66	1.0
397		50	50		1.0
398		50		50	1.0
399			50	50	1.0
400	50			50	1.0
401		50		50	1.0
404	50			50	1.0
405			50	50	1.0
406			50	50	1.0
408	50			50	1.0
409			50	50	1.0
441			25	75	0.996473
594		25		75	0.996473
596		75		25	0.996473
598	75		25		0.996473
602		25		75	0.996473
610			75	25	0.996473
611		75	25		0.996473
614	25			75	0.996473
615		25		75	0.996473
856			33	66	0.997452
860			33	66	0.997452
862			33	66	0.997452
863	33			66	1.0
864	66	33			0.997452
865	33	66			1.0
866		66		33	0.997452
901		33	66		1.0
902			83	16	0.994512
903	66	16		16	0.988813
904	66	33			1.0
905			16	83	0.994512
907		83	16		0.994512
909		16		83	0.994512
910		16		83	0.994512
913			16	83	0.994512
914	83		16		0.994512
918	14			85	0.993533
919		14		85	0.993533
921	85	14			0.993533
930	84			15	0.999986
1132			84	15	0.999986
1162	10		90		0.90298
1176	10		90		0.90298
1190	88			11	0.923564
1258	75		25		0.996473
1259			75	25	0.996473
1260	75	25			0.996473
1264	75	25			0.996473
1266	75			25	0.996473
1267			75	25	0.996473
1268	75		25		0.996473
1269			25	75	0.996473
1270	75	25			0.996473
1272			25	75	0.996473
1299		33		66	0.997452
1301	66			33	0.997452
1302	66	33			0.997452
1303	66		33		0.997452
1304			66	33	0.997452
1305		66	33		0.997452
1307		33	66		0.997452
1309	66			33	0.997452
1311		66	33		0.997452
1319		33		66	0.997452
1363	84	15			1.0
1365	84			15	1.0
1366	84	15			1.0
1369		7	92		0.999602
1370	92		7		0.999602
1371		11		88	1.0
1372		18		81	1.0
1373			88	11	1.0
1376	7	81	11		1.0
1377	81	18			1.0
1378		88		11	1.0
1379		30	61	7	1.0
1380	80			19	1.0
1381	80	11	7		1.0
1382	11		88		1.0
1383	80	19			1.0
1385	88	3	7		0.999079
1386	92			7	0.999664
1387		7		88	0.999079
1401		51	48		1.0
1417	50		50		1.0
1441	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain