SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18407

Length: 820 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18407

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16309	20/40
SustainPine v2.0	sp_v2.0_unigene21434	5/40
SustainPine v2.0	sp_v2.0_unigene22796	9/40
SustainPine v2.0	sp_v2.0_unigene60307	5/40

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=60S acidic ribosomal protein P0 gb\|AAB63814.1\| acidic ribosomal protein P0 [Glycine max]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	60s acidic ribosomal protein p0	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	90%
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	response to zinc ion	GO:0010043	Biological Process	90%
Blast2go	gene expression	GO:0010467	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	nucleolus	GO:0005730	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-
Sma3	Ribosomal protein L10/acidic P0	IPR001790	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
96		75	25		0.996473
139		28		71	1.0
140	71		28		1.0
142	71	28			1.0
144	71			28	1.0
147	71	28			1.0
148	71	28			1.0
151			28	71	1.0
152			28	71	1.0
156	71	28			1.0
158	71	28			1.0
160	85	14			0.993533
396	90	6		3	0.996531
397			9	90	1.0
401		5		94	0.998744
405			94	5	0.998894
408	2	5		91	0.995912
411	90			9	1.0
412		6	90	3	0.996531
413	6		93		0.999153
416	43	53		3	1.0
422			58	41	1.0
431		56		43	1.0
461		55	44		1.0
467			46	53	1.0
470		53	46		1.0
472	46			53	1.0
485		45	54		1.0
494	43	56			1.0
497		56		43	1.0
500		56		43	1.0
502	73			26	1.0
519		47		52	1.0
581	27	72			1.0
584	30		70		1.0
586	90	10			0.90298
589	90			10	0.90298
591	90		10		0.90298
592	90	10			0.90298
596			33	66	1.0
641			33	66	1.0
650		16	50	33	1.0
651			83	16	0.994512
652			83	16	0.994512
653	83	16			0.994512
654	83		16		0.994512
655	75	25			0.996473
766	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain