SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18400

Length: 502 nt

UniGene Fasta

>uagpf_v2_unigene18400
CTTCCATGTTCGTCGTGACCTTGGCTGTCACTCAAATTTTACTTGCATTGAAATGAAGGATTGGGAACAGCCAGGAGATGCGCAATGCTCCCCAGAGAAACTGATTAAACAAGTCATTCTTGCAACACGGAAAGCTGGGTCCCCCCTTGCTGGGGAGAATGCTCTTCCAAGATTTGACGAAGGTGCATACGATCAGATCGTTAGGAATGCCAATCTCCGACTAGCAGAAGATGGTCATAACACCATAGTGGAACCCATGTGTGCATTCACTTATTTGAGAATGAACCAGCATTTGTTCCAGCCTGAAAATTGGAGATTGTTTGTCTCATTTGTAAGAAAAATGGCACAAGGAGGGGTCTCACATTCATGGGAGCAAGAACACGGAGATACAGACTCATTTGTCTATGCCACGGTCCCATTGGTCCAAGAGGCTGCTGCACTCTTGCATAATTAAGCAAGCCTAAAGCTTAACTTTTTTGAAGCAGGCAAAATCTGAATGTAA

Ace file of the UniGene uagpf_v2_unigene18400

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18016	17/22
SustainPine v2.0	sp_v2.0_unigene81189	2/22

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase n=1 Tax=Populus trichocarpa RepID=B9HKX1_POPTR	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	78%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	78%
Blast2go	gametophyte development	GO:0048229	Biological Process	78%
Blast2go	starch catabolic process	GO:0005983	Biological Process	78%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	78%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	78%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	78%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	78%
Blast2go	protein self-association	GO:0043621	Molecular Function	78%
Blast2go	cytosol	GO:0005829	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD77

Fln msg: your sequence is shorter than subject: 151 - 210

Fln protein: FHVRRDLGCHSNFTCIEMKDWEQPGDAQCSPEKLIKQVILATRKAGSPLAGENALPRFDEGAYDQIVRNANLRLAEDGHNTIVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKMAQGGVSHSWEQEHGDTDSFVYATVPLVQEAAALLHN*

Protein Length: 152

Fln nts: CTTCCATGTTCGTCGTGACCTTGGCTGTCACTCAAATTTTACTTGCATTGAAATGAAGGATTGGGAACAGCCAGGAGATGCGCAATGCTCCCCAGAGAAACTGATTAAACAAGTCATTCTTGCAACACGGAAAGCTGGGTCCCCCCTTGCTGGGGAGAATGCTCTTCCAAGATTTGACGAAGGTGCATACGATCAGATCGTTAGGAATGCCAATCTCCGACTAGCAGAAGATGGTCATAACACCATAGTGGAACCCATGTGTGCATTCACTTATTTGAGAATGAACCAGCATTTGTTCCAGCCTGAAAATTGGAGATTGTTTGTCTCATTTGTAAGAAAAATGGCACAAGGAGGGGTCTCACATTCATGGGAGCAAGAACACGGAGATACAGACTCATTTGTCTATGCCACGGTCCCATTGGTCCAAGAGGCTGCTGCACTCTTGCATAATTAA___GCAAGCCTAAAGCTTAACTTTTTTGAAGCAGGCAAAATCTGAATGTAA

Fln Alignment:

Contig18400___NFTCIEMKDWEQPGDAQCSPEKLIKQVILATRKAGSPLAGENALPRFDEGAYDQIVRNANLRLAEDGHNTIVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKMAQG-GVSHSWEQEHGDTDSFVYATVPLVQEAAALLH
D5AD77________________NFTCIEMKDWEQPGDAQCSPEKLIKQVILATRKAGVPLAGENALPRFDQDAHNQIIRNANLRLPEDSGNTTVEPMCAFTYLRMSQHLFHPENWRLFVSFVRKLAQGQATSNSWEQEHRDTDKFVHAGGPMVQEAAALLH

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
83		75		25	0.996473
84	75	25			0.996473
85	75		25		0.996473
89	25			75	0.996473
92		75		25	0.996473
93		75		25	0.996473
94	75		25		0.996473
96	75			25	0.996473
98	75			25	0.996473
99	75	25			0.996473
103		25	75		0.996473
170	80	20			0.999996
172	80			20	0.999996
173		20		80	0.999996
174			20	80	0.999996
179		20	80		0.999996
180	80			20	0.999996
181	80			20	0.999996
190		20		80	0.999996
191	80			20	0.999996
343	88	11			0.999952
344	58		5		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain