SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18310

Length: 473 nt

UniGene Fasta

>uagpf_v2_unigene18310
GGCATATTTGCTGAAGCTCTTCGATTGGTGCTAACTCAAGTCCTCCTTCAGAAAAAGGGGTTGAGCTTAAATCCAATCACTAGTTTGTATTACATAGCTCCTTGAAGTTTCCTATTTCTTTTTGTCCCTTGGTATTTGTTGGAGCAACCAGCAATGGAGGTTCAGCAGTTGCAGTTCAATTTTTGGATTTTTTTCTCGAATGCTCTTTGTGCATTGGCACTAAACTTCTCCATTTTTCTCGTAATTGGTAGAACTGGAGCAGTCACTGTTAGAGTGGCTGGTGTTCTAAAGGATTGGATATTGATTGCTCTTTCAACAGTAGTATTCCCAGAGTCAGCAATCACAGGCCTCAACATCATTGGATATGCTATTGCTCTTTGTGGTGTGGTAATGTATAACTACTTGAAGGTGAAGGATGGACGTGCCATCAATCAATTGCCCGTTGATGCCGCTACAGAAAAGACAAAATCATA

Ace file of the UniGene uagpf_v2_unigene18310

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9458	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp\|Q9LRP2.1\|PT317_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At3g17430 dbj\|BAB02919.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24335.1\| Unknown protei	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	probable sugar phosphate phosphate translocator at3g17430-like	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	organic anion transmembrane transporter activity	GO:0008514	Molecular Function	86%
Blast2go	endomembrane system	GO:0012505	Cellular Component	86%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMU2

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 106 - 163

Fln protein: MEVQQLQFNFWIFFSNALCALALNFSIFLVIGRTGAVTVRVAGVLKDWILIALSTVVFPESAITGLNIIGYAIALCGVVMYNYLKVKDGRAINQLPVDAATEKTKS

Protein Length: 107

Fln nts: GGCATATTTGCTGAAGCTCTTCGATTGGTGCTAACTCAAGTCCTCCTTCAGAAAAAGGGGTTGAGCTTAAATCCAATCACTAGTTTGTATTACATAGCTCCTTGAAGTTTCCTATTTCTTTTTGTCCCTTGGTATTTGTTGGAGCAACCAGCA_-_ATGGAGGTTCAGCAGTTGCAGTTCAATTTTTGGATTTTTTTCTCGAATGCTCTTTGTGCATTGGCACTAAACTTCTCCATTTTTCTCGTAATTGGTAGAACTGGAGCAGTCACTGTTAGAGTGGCTGGTGTTCTAAAGGATTGGATATTGATTGCTCTTTCAACAGTAGTATTCCCAGAGTCAGCAATCACAGGCCTCAACATCATTGGATATGCTATTGCTCTTTGTGGTGTGGTAATGTATAACTACTTGAAGGTGAAGGATGGACGTGCCATCAATCAATTGCCCGTTGATGCCGCTACAGAAAAGACAAAATCATA

Fln Alignment:

Contig18310___MEVQQLQFNFWIFFSNALCALALNFSIFLVIGRTGAVTVRVAGVLKDWILIALSTVVFPESAITGLNIIGYAIALCGVVMYNYLKVKDGRAINQLPVDAATEKTKS
A9NMU2________________MEVQQLQFNFWIFFSNALCALALNFSIFLVIGRTGAVTVRVAGVLKDWILIALSTVVFPESAITGLNIIGYAIALCGVVMYNYLKVKDGRAMNQLPIDAATEKSKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain