SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18141

Length: 2256 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene18141
ACTGCACCTGCAGGATTGAACGTGCTTGGAGCACTGGATGCAAAAGGATTAGCTGCTGCTGGACCAGGCTGGGCACCAAACTGGAAAACAGATTGCCCAGCAGACGGAGCAGTTGGCTGAGAGCCAAACACGAAAGATGGAGCTGGTGAAGCAGTCTGTCCACCAAATACTGGTGGAACAGGACTTGATACCTGGGCAGGATCCTCTGCCATGCTGTCTTCCATCTGATCAGCCGGTGGTGTTGGTGATGGTGCAGCCCCAAAAGCAGAATTTGAGTTGGTCAACCCAAAAATTGGTTGAGTCATAGAAGAACTGTCTTTCGAAGCAAATGTAAATGTGCTAGGGGGGGTGGTACCAGTTGATGCAAACGAGAATGTAGTTCCAGATGGAGTGCTTCCTGCACCTCCAAAAGTAAAAGAGCCACTGCTTGCAGCTGCAGATCCACCAAAAGAAAAACCTGTAGATGGCAAGGATGCAGTGCCCCCAAACCCAGATCCAAACGAGGTCATTGTTGACTGTGAAGATGTTGTACTGGAAGCTCCAAAAGGCTGTCCCAAGCCAAATGATGGAGTGCTGTTTGAACCAAATAATGGAGTGCTAGCAGAACCATACGAGGCACTGCCTCCACCAAATGCTGGAGTGCTGGCAGCACCAAATGACACACTGCTTCCACCAAATGCTGGAGTGCTGGCAGAAACAAAAGAGGAGCTGCTTCCACCAAATGAAGGAGAACTGCTAGATCCAAATGTACTCCCAGAACCAAATGAGGGGGTGCTGCCAGAACCAAATGGAGGAGTGCTCCCAGAACCAAACGCAGGAGTGCTGCCAGAACCAAATGAAGGGGTGCTCCCTGTGGTAAAGGAAGATGTATTTGAACCAAATGTTACACCAGGGACAAACGAAGGTGCAGTGCTGGAACTAGATTGAAGACTGGTTAATCCAAATGAGGGAGATGTACTAGAACCAAACTGCGGAGTGGTGCTCAACCCAAACGAAGGAGAAGTGGTGGAACCAAACTGTGGAGTAGTACTTAACCCAAATGAAGGAGAGGTATTTGAACCAAACTGAGAGGTGCTACCCAATCCAAATGAAGTACTGCTGCTACCAGAGAAATTAGAAGTGCCGGCGGAACCTACTGAGAGGCTACTGCTAGCACCAAATGTAGGTGCCGTGCCCGACCCAGGTGCAGGGGTACTGCTAGAAGCAAATTGGGCAGAAGTGCTACTATTGCTGAGGCCAAAAGAAGGTAGACTGGATGAGCTTAATGAACTGGGTGCAGTTAAGCCAAATAAGCTACCTGAAGCACCCAAAGCCGAAGCAGACAGAGTTGACCCGAACAAAGAGGGGCTTGTATTCCCACTAGAAAGAGACGATGAGTTGGCAGAACTCCCAAACACAAATGAACCTGAGGTAGTAGCTGTAGCAGAACTTGGCACCTGCCCAAAGAGAGATCCTGCAAAAGAAGACTGCGTATTGGGAAGGAGACTACTTGTAGGAGCTGAAATTGCAGTTGTGCTGGATAGAGTGCTTAAAGTACCATTGGTTACTCCAAGAGATGGGGAGGAAGCTAAACCACTGCTTTTAGGTTCATTTTGGGATTTTATTGTGCAATTTTCACCACTGGTGGAGCTTTTAATTGATTGATCTTCTGCTACTACAGATGATGCTTCAACCTGTGTAAGAGTGTCAGGACTTCTCAATTTGGATTCCACCTTTGCGGTAGTGGCTGCCAGAGCTGCTCTTTCCAGCAAACGAAAATGGAACCGAGTTCATACCATTTACCTTGGAGACAGATCCACCGAACAATGGGAGGCCTGCAGAAGTTGTGGCGACAGTGGTAGATGTAGAGAACATACTGCTTGAACTTGAGAAAGCGAGGGAACTCTCTGATAATCCAGAGGTTGATGAACCCTTAAAGGTTGCAGCTAAAGGTTCTGATCCATCTGTAGGTGCAGATGCAGCTGCAGCAACAGCAGTACTGAAAGATGATTCTGGCTTGCTTTCAAATTTGAAATCAAACTTCGGCTTGGTAGTATCAACATCTGTGGATCCACTTGCAGAAAAAGAGAAGACGGGCCCTTTGCTGGGACTTGCTGAACCAAAGCTGTAAGTTGGAGTAACATTGGCTGTAGTAGGCTGAGTGTTACCTTTATTTAAAGGAGATGGAATGACTGAGGGAGTGGGTGGTGGTTCTGCAAAATTACTATTAGATGGAGTAACAGGAAAAGTAAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene18141 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene590	95/103
SustainPine v2.0	sp_v2.0_unigene22689	2/103
SustainPine v2.0	sp_v2.0_unigene74739	1/103

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Herpes_gp2 multi-domain protein	-	-	2.0e-24	23%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	34%
Blast2go	protein	-	-	1.23037e-17	49%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S59, nucleoporin	IPR007230	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7KXT7

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: VIEELSFEANVNVLGGVVPVDANENVVPDGVLPAPPKVKEPLLAAADPPKEKPVDGKDAVPPNPDPNEVIVDCEDVVLEAPKGCPKPNDGVLFEPNNGVLAEPYEALPPPNAGVLAAPNDTLLPPNAGVLAETKEELLPPNEGELLDPNVLPEPNEGVLPEPNGGVLPEPNAGVLPEPNEGVLPVVKEDVFEPNVTPGTNEGAVLELD*

Protein Length: 210

Fln nts: ACTGCACCTGCAGGATTGAACGTGCTTGGAGCACTGGATGCAAAAGGATTAGCTGCTGCTGGACCAGGCTGGGCACCAAACTGGAAAACAGATTGCCCAGCAGACGGAGCAGTTGGCTGAGAGCCAAACACGAAAGATGGAGCTGGTGAAGCAGTCTGTCCACCAAATACTGGTGGAACAGGACTTGATACCTGGGCAGGATCCTCTGCCATGCTGTCTTCCATCTGATCAGCCGGTGGTGTTGGTGATGGTGCAGCCCCAAAAGCAGAATTTGAGTTGGTCAACCCAAAAATTGGTTGAGTCATAGAAGAACTGTCTTTCGAAGCAAATGTAAATGTGCTAGGGGGGGTGGTACCAGTTGATGCAAACGAGAATGTAGTTCCAGATGGAGTGCTTCCTGCACCTCCAAAAGTAAAAGAGCCACTGCTTGCAGCTGCAGATCCACCAAAAGAAAAACCTGTAGATGGCAAGGATGCAGTGCCCCCAAACCCAGATCCAAACGAGGTCATTGTTGACTGTGAAGATGTTGTACTGGAAGCTCCAAAAGGCTGTCCCAAGCCAAATGATGGAGTGCTGTTTGAACCAAATAATGGAGTGCTAGCAGAACCATACGAGGCACTGCCTCCACCAAATGCTGGAGTGCTGGCAGCACCAAATGACACACTGCTTCCACCAAATGCTGGAGTGCTGGCAGAAACAAAAGAGGAGCTGCTTCCACCAAATGAAGGAGAACTGCTAGATCCAAATGTACTCCCAGAACCAAATGAGGGGGTGCTGCCAGAACCAAATGGAGGAGTGCTCCCAGAACCAAACGCAGGAGTGCTGCCAGAACCAAATGAAGGGGTGCTCCCTGTGGTAAAGGAAGATGTATTTGAACCAAATGTTACACCAGGGACAAACGAAGGTGCAGTGCTGGAACTAGATTGA___AGACTGGTTAATCCAAATGAGGGAGATGTACTAGAACCAAACTGCGGAGTGGTGCTCAACCCAAACGAAGGAGAAGTGGTGGAACCAAACTGTGGAGTAGTACTTAACCCAAATGAAGGAGAGGTATTTGAACCAAACTGAGAGGTGCTACCCAATCCAAATGAAGTACTGCTGCTACCAGAGAAATTAGAAGTGCCGGCGGAACCTACTGAGAGGCTACTGCTAGCACCAAATGTAGGTGCCGTGCCCGACCCAGGTGCAGGGGTACTGCTAGAAGCAAATTGGGCAGAAGTGCTACTATTGCTGAGGCCAAAAGAAGGTAGACTGGATGAGCTTAATGAACTGGGTGCAGTTAAGCCAAATAAGCTACCTGAAGCACCCAAAGCCGAAGCAGACAGAGTTGACCCGAACAAAGAGGGGCTTGTATTCCCACTAGAAAGAGACGATGAGTTGGCAGAACTCCCAAACACAAATGAACCTGAGGTAGTAGCTGTAGCAGAACTTGGCACCTGCCCAAAGAGAGATCCTGCAAAAGAAGACTGCGTATTGGGAAGGAGACTACTTGTAGGAGCTGAAATTGCAGTTGTGCTGGATAGAGTGCTTAAAGTACCATTGGTTACTCCAAGAGATGGGGAGGAAGCTAAACCACTGCTTTTAGGTTCATTTTGGGATTTTATTGTGCAATTTTCACCACTGGTGGAGCTTTTAATTGATTGATCTTCTGCTACTACAGATGATGCTTCAACCTGTGTAAGAGTGTCAGGACTTCTCAATTTGGATTCCACCTTTGCGGTAGTGGCTGCCAGAGCTGCTCTTTCCAGCAAACGAAAATGGAACCGAGTTCATACCATTTACCTTGGAGACAGATCCACCGAACAATGGGAGGCCTGCAGAAGTTGTGGCGACAGTGGTAGATGTAGAGAACATACTGCTTGAACTTGAGAAAGCGAGGGAACTCTCTGATAATCCAGAGGTTGATGAACCCTTAAAGGTTGCAGCTAAAGGTTCTGATCCATCTGTAGGTGCAGATGCAGCTGCAGCAACAGCAGTACTGAAAGATGATTCTGGCTTGCTTTCAAATTTGAAATCAAACTTCGGCTTGGTAGTATCAACATCTGTGGATCCACTTGCAGAAAAAGAGAAGACGGGCCCTTTGCTGGGACTTGCTGAACCAAAGCTGTAAGTTGGAGTAACATTGGCTGTAGTAGGCTGAGTGTTACCTTTATTTAAAGGAGATGGAATGACTGAGGGAGTGGGTGGTGGTTCTGCAAAATTACTATTAGATGGAGTAACAGGAAAAGTAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig18141___PVDANENVVPDGVLPAPPK----VKEPLLAAADPPKEKPVDGKDAVPPNPDPNEVIVDCEDVVLEAPKGCP--KPNDGVLFEPNNGVLAEPYEA-LPPPNAGVLAAPND-TLLPPNAGVLAETKXXXXXXXXXXXXXPNVLPEPNEGVLPEPNGGVLPEPNAGVLPEPNEGVLPVVKEDVFEPNVTPGTNEGAVL
D7KXT7________________PKAGEEPKLKDGVLDAPKAGAGVLDAPNAGVLDAPKAPPE--LKALLPNALP------------ELPKAGAGDTPNAGELEEPNEGVVAAPKAGVLLEPKADVLDAPNPGVLVAPNPGVLVA---------------------PNPGVLVAPNAEVFEAPNAEVFEAPNAEVFEAPKAGVLE--VPKGVDEPKVL

SNPs (tot: 203)

Position	A %	C %	G %	T %	Probability
58		33		66	1.0
59			50	50	1.0
61	16	33	50		1.0
62		50	33	16	1.0
63	50	16		33	1.0
66	50	50			1.0
69		57		42	1.0
70	42		57		1.0
71		42	42	14	1.0
73	42		14	42	1.0
74		42	42	14	1.0
75		42	14	42	1.0
79		14		85	0.993533
80		85		14	0.993533
81		85		14	0.993533
82		85	14		0.993533
83			14	85	0.993533
85	85			14	0.993533
90		14		85	0.993533
93	14	85			0.993533
131	14		85		0.993533
346	18			81	0.999994
416			20	80	0.999996
417	80			20	0.999996
418		80	20		0.999996
420		20		80	0.999996
424		77		22	0.999999
425		77	22		0.999999
426	77		22		0.999999
432	20		80		0.999996
436	90		10		0.90298
437		70		10	0.999998
438	90		10		0.90298
441		10		90	0.90298
443		90		10	0.90298
444			10	90	0.90298
447	90			10	0.90298
449			90	10	0.90298
455	10	70			0.999998
463	50		50		1.0
498	28		71		1.0
504	85		14		0.993533
507			14	85	0.993533
508	14			85	0.993533
510		14	85		0.993533
513			14	85	0.993533
519	85			14	0.993533
520	85	14			0.993533
522		14	85		0.993533
523	85			14	0.993533
524		14	85		0.993533
525	14	85			0.993533
616		22	77		0.999999
617	77		22		0.999999
621	77		22		0.999999
623		77	22		0.999999
626	77	22			0.999999
629	71		28		1.0
630	71		28		1.0
631	71	28			1.0
632	71			28	1.0
635	14			85	0.993533
637	16			16	0.988813
639	83			16	0.994512
641	16	83			0.994512
684	71	28			1.0
686		71		28	1.0
687	71	28			1.0
692		33	66		1.0
693		33		66	1.0
696	66		33		1.0
700			33	66	1.0
701		66		33	1.0
704	33	66			1.0
706		66		33	1.0
775	83	16			0.994512
778	83	16			0.994512
781		83	16		0.994512
782	16			83	0.994512
787		83	16		0.994512
788		83	16		0.994512
794		83	16		0.994512
795			83	16	0.994512
798		16	83		0.994512
801	16			83	0.994512
904	83	16			0.994512
908	20		80		0.995493
909		20	80		0.995493
910	80	20			0.995493
911	80			20	0.995493
913	80		20		0.995493
914		80	20		0.995493
915	80	20			0.995493
916	80			20	0.995493
918		80		20	0.995493
920	16	83			0.994512
921		83	16		0.994512
925	16			83	0.994512
926		16		83	0.994512
927		16	83		0.994512
930		83	16		0.994512
932		14	71	14	0.984337
936	85			14	0.993533
937	85			14	0.993533
943			14	85	0.993533
948		14		85	0.993533
951	14		85		0.993533
972		42		57	1.0
1003	88	11			0.923564
1007		88	11		0.923564
1009		11		88	0.923564
1011		88		11	0.923564
1012	88		11		0.923564
1014		11		88	0.923564
1015		33		66	1.0
1016			11	88	0.923564
1017	88			11	0.923564
1019	11	88			0.923564
1020		11		88	0.923564
1023	11			88	0.923564
1024	11			88	0.923564
1033	81			18	0.999994
1034			81	18	0.999994
1036	81		18		0.999994
1037	81	18			0.999994
1140		85		14	0.993533
1150	87	12			0.992554
1151	87		12		0.992554
1153			12	87	0.992554
1154	12			87	0.992554
1156		14		85	0.993533
1157		87		12	0.992554
1159	12		87		0.992554
1162	87		12		0.992554
1163			87	12	0.992554
1168	87			12	0.992554
1169		12	87		0.992554
1170	12			87	0.992554
1249		20		80	0.995493
1250			20	80	0.995493
1252		20	80		0.995493
1255	20			80	0.995493
1258	80			20	0.995493
1259		80		20	0.995493
1260		80	20		0.995493
1261	80		20		0.995493
1266	20			80	0.995493
1268		80		20	0.995493
1269		20		80	0.995493
1270	20			80	0.995493
1277		28	71		1.0
1280		28		71	1.0
1282	71			28	1.0
1289	71			28	1.0
1290		75	25		1.0
1291			37	62	1.0
1292		87		12	0.992554
1293		75		25	1.0
1296		87	12		0.992554
1298		37	62		1.0
1299		12		75	0.975346
1300	12			87	0.992554
1301		12		87	0.992554
1302	12		87		0.992554
1327		12	87		0.992554
1329	87	12			0.992554
1336	77	22			0.999999
1338		11		88	0.923564
1340			22	77	0.999999
1343	66		33		1.0
1344	88	11			0.923564
1345		25		75	1.0
1348	75			25	1.0
1351			25	75	1.0
1353		75		25	1.0
1354	75		25		1.0
1355			75	25	1.0
1360	25		75		1.0
1404			23	76	1.0
1408			23	76	1.0
1410			23	76	1.0
1414	75		5		1.0
1415		75		25	1.0
1416	75	5		20	1.0
1419		20	80		1.0
1420	80			20	1.0
1423	75			5	1.0
1424		75		25	1.0
1426	20	75	5		1.0
1429		20		80	1.0
1430	20	80			1.0
1553			93	6	0.99903
1555	85	10	2	2	1.0
1556		7	90		0.999998
1557		90		10	1.0
1558	85			15	1.0
1562		92	2	5	0.991359
1564	5			94	0.9982
1566	5			94	0.9982
1567		7		92	1.0
1568	5			94	0.9982
1803	73		26		1.0
1904		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain