SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18098

Length: 943 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18098

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1244	13/17
SustainPine v2.0	sp_v2.0_unigene18626	1/17
SustainPine v2.0	sp_v2.0_unigene77650	1/17

Source	Descriptions	Term	Type	Identity
AutoFact	leucine carboxyl methyl transferase [Brachypodium sylvaticum]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	leucine carboxyl methyltransferase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	80%
Blast2go	Tetracycline biosynthesis	00253	80%
Blast2go	Histidine metabolism	00340	80%
Blast2go	Tyrosine metabolism	00350	80%
Blast2go	Phenylalanine metabolism	00360	80%
Blast2go	Tryptophan metabolism	00380	80%
Blast2go	Benzoxazinoid biosynthesis	00402	80%
Blast2go	Selenocompound metabolism	00450	80%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	80%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	80%
Blast2go	Methane metabolism	00680	80%
Blast2go	Porphyrin and chlorophyll metabolism	00860	80%
Blast2go	Carotenoid biosynthesis	00906	80%
Blast2go	Phenylpropanoid biosynthesis	00940	80%
Blast2go	Flavonoid biosynthesis	00941	80%
Blast2go	Anthocyanin biosynthesis	00942	80%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	80%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	80%
Blast2go	Insect hormone biosynthesis	00981	80%
Blast2go	Biosynthesis of type II polyketide products	01057	80%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	methylation	GO:0032259	Biological Process	0.0	80%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Leucine carboxyl methyltransferase	IPR007213	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Leucine carboxyl methyltransferase, LCTM1 1	IPR016651	-	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
60	66	33			0.997452
63	66		33		0.997452
65			33	66	0.997452
69		33	66		0.997452
73			33	66	0.997452
79	66	33			0.997452
80	33			66	0.997452
81		33	66		0.997452
82			66	33	0.997452
83		33	66		0.997452
125		87		12	0.992554
126	87		12		0.992554
127	87			12	0.992554
131		12	87		0.992554
132	12			87	0.992554
143	81	18			0.999994
146	81	18			0.999994
374		90		10	0.90298
376		10		90	0.90298
391	50		50		1.0
672	66	33			0.997452
674			66	33	0.997452
676	66		33		0.997452
677	66			33	0.997452
679	33			66	0.997452
680		33	66		0.997452
681		33	66		0.997452
684		66	33		0.997452
685	66		33		0.997452
686		33	66		0.997452
688	66		33		0.997452
690		33		66	0.997452
691	33			66	0.997452
692		33		66	0.997452
695		33	66		0.997452
696	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain