SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18095

Length: 1088 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18095

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16123	12/86
SustainPine v2.0	sp_v2.0_unigene24813	57/86
SustainPine v2.0	sp_v2.0_unigene61427	4/86
SustainPine v2.0	sp_v2.0_unigene62460	2/86
SustainPine v2.0	sp_v2.0_unigene63701	3/86
SustainPine v2.0	sp_v2.0_unigene77051	1/86

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Like-Sm ribonucleoprotein-related, core [Medicago truncatula]	-	-	2.0e-32	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	small nuclear ribonucleoprotein g	-	-	1.4013e-45	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	1.4013e-45	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	0.0	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 77)

Position	A %	C %	G %	T %	Probability
56		33		66	0.997452
59		33	66		0.997452
61	66			33	0.997452
63	25	25			0.995533
64		25	75		0.996473
65	50	25		25	0.995533
66	50	25		25	0.995533
67	50		25	25	0.995533
68	50		25	25	0.995533
69		50	50		1.0
70	25	75			0.996473
71		75		25	0.996473
72		75	25		0.996473
74		75		25	0.996473
75	25		25		0.995533
76		75	25		0.996473
77		75		25	0.996473
78		75		25	0.996473
79	75		25		0.996473
81		75		25	0.996473
83		75		25	0.996473
84		20		80	0.995493
85		20	20	60	0.99255
86	20			80	0.995493
87		80	20		0.995493
89	80			20	0.995493
91	20		80		0.995493
93	71	28			1.0
94	71		14	14	0.984337
95	71			28	1.0
96		85	14		0.993533
98		14	85		0.993533
99	85			14	0.993533
100		14	85		0.993533
102		14		85	0.993533
103	14	71	14		0.984337
104		14	85		0.993533
105	71			28	1.0
106		85	14		0.993533
107	14			85	0.993533
108	85	14			0.993533
112	85	14			0.993533
113	14		85		0.993533
468		8	92		0.999718
470	88			8	0.999262
474		11		88	1.0
475	3	3	84	7	0.99801
493		5		94	0.999997
496		5	1	92	0.999988
501		1		94	0.960243
502		7	92		1.0
503	94	3		1	0.960243
507	93	2			0.970804
508	93			2	0.970804
512			4	95	0.996599
514	2	4	90	2	0.938371
515	4		95		0.996252
516	95	4			0.996252
517	95			4	0.996252
519	4	95			0.996599
523	22	75			1.0
525	95			4	0.996252
527	95	4			0.996599
529		4	95		0.996599
562	29			70	1.0
584	91		8		1.0
586		76		23	1.0
621	81			18	1.0
752			84	15	0.999986
766	53		46		1.0
801			53	46	1.0
833		40		60	1.0
843	33		66		1.0
853	33	66			1.0
867	77		22		0.999999
892			71	28	1.0
897	28	71			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain