SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18073

Length: 1399 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18073

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14142	23/48
SustainPine v2.0	sp_v2.0_unigene61856	22/48

Source	Descriptions	Term	Type	Identity
AutoFact	PREG-like protein (Fragment) n=1 Tax=Picea mariana RepID=O65065_PICMA	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	80%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclin PHO80-like	IPR013922	-	0.0	-
Sma3	Cyclin P/U	IPR012389	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP68

Fln msg:

Fln protein: MQSDICRLRAVAEDGGLGVGEEEEGNDFPPESQQPRILSVLSYALRRLVTRNDQFTSKNTVTVFHGVRTPGISIAKYLERVYKYTSCSPSCFVAAYIYIDRLVHRQPNFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNSELNRLEIDFLFRLAFRLKVTAKVFESYCLHLEKEMLVGATGQRIERTLPGFLGVSSDSDSAKREEPKVTRCASATAMVVGHHPDPPSR*

Protein Length: 240

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTACGTCGTGACCTTGGCTGTCACTCATATTTCGTCATCGTTTAGATTGCAAACCCTACCTATAGCAGTTCCATTATTCCCCTTACAGGTCGAGGTCGCGTGATCAAATCTCCGAGAAACGCGAAAAGGCCGTGGGATCATCATATCAAAATTCCGAATCATTTGGCGGGGGCGCCATCGAGTCGCTTGCCCGTTCGATTTAACGGCGATGTGTGCGTTAAGACCGGAGGCTTG_-_ATGCAATCCGATATTTGCCGACTGCGAGCAGTCGCCGAGGACGGGGGACTAGGCGTCGGAGAGGAGGAGGAAGGAAATGATTTCCCGCCCGAGTCGCAGCAACCTCGAATTCTCTCGGTGCTCTCGTACGCCCTTCGGCGCCTGGTCACACGGAATGACCAATTCACTTCAAAGAACACCGTCACTGTTTTCCACGGGGTCCGCACTCCGGGTATTAGCATAGCCAAGTATCTGGAACGGGTTTACAAGTACACCAGCTGCAGCCCCTCATGTTTCGTCGCCGCCTACATCTATATCGACCGCCTCGTTCACAGGCAGCCGAATTTCCCGGTCATTTCACTCAATATCCATCGCTTGCTCCTCACAAGCGTCATGATCGCCGCCAAAATGCTGGATGATGCGCATTATAATAATGCTTTCTATGCCAGAGTGGGCGGCATTAGCAATTCCGAGCTTAACCGGCTCGAAATCGACTTTCTTTTCCGTCTCGCTTTCCGATTGAAGGTCACGGCTAAAGTATTCGAAAGCTATTGTTTGCACTTGGAGAAGGAAATGCTCGTAGGTGCCACCGGACAGAGGATAGAGAGGACTCTACCCGGATTTCTTGGGGTTTCATCGGACTCCGATAGTGCCAAGCGCGAGGAGCCTAAGGTTACCCGCTGTGCTTCTGCGACAGCCATGGTGGTCGGACATCACCCCGATCCTCCTAGCCGGTGA___ATGTGGAGGCCGCTTATGGTGCAGGGGACATGCCTGCCTCTACCTAGCAGTTGTCAATAGTATTTGCTAATCAGGTACACATGGACTGACCCTAATCTTTTAGGGCAAGCATTATCTACCAAGCAGTAATGCAAAATATGCTGGAATGTTCGCCGTTGGATTAAAAGTAAACATTGATATCCCAACGTTGAAATTCTATTACTGGGTGCTTATTTATCACCGTTTTTAAGAATGTCTGTACATTTTTTCGTTCTAAGAATGTCTGTACAGGGTGTTGCTTTGAAAAATAACTGAAAGTAACCGTCTGTATTCTTGTGGTGATTGGAATTAATGCGAAGACTGTAAAATTCTTTAAGAAGTAACACTATCAGCTTTTGCAGAAAACTTCTTTTACCTTTGAATGGCCGAGTGAGGATTTTG

Fln Alignment:

Contig18073___MQSDICRLRAVAXXXXXXXXXXXXXNDFPPESQQPRILSVLSYALRRLVTRNDQFT---SKNTVTVFHGVRTPGISIAKYLERVYKYTSCSPSCFVAAYIYIDRLVHRQPNFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNSELNRLEIDFLFRLAFRLKVTAKVFESYCLHLEKEMLVGATGQRIERTLPGFLGVSSDSDSAKREEPKVTRCASATAMVVGHHPDPPSR
A9NP68________________MQSGIRRERPATEDGGLGVEEEEEGYECPPESQLPRILAVLSYALQRLVTRNDQCALPADGKKITVFHGVRSPSITVAKYLERIYKYTSCSPSCFVVGYVYIDRLVHRQPDFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNTELNRLEIDFLFRLGFRLKVTGKVFESYCLHLEKEMLLGTAGQRIERTLPEFHRVSLESDSAKREESKVPRCSSATAMVVGHHPDPPSR

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
80	50	25		25	0.995533
81	70	20	10		0.999998
83		90		10	0.90298
93	80		20		0.999996
96	80			20	0.999996
101	20	80			0.999996
102	80	20			0.999996
104		20		80	0.999996
765	33	66			1.0
766			33	66	1.0
770	33	66			1.0
771		33	66		1.0
772			33	66	1.0
774		33	66		1.0
775	33		66		1.0
779			33	66	1.0
781	33			66	1.0
782	33	66			1.0
783	33			66	1.0
784	33	66			1.0
785	33		66		1.0
835		60	40		1.0
836	60			40	1.0
838		40	60		1.0
839			60	40	1.0
843	60	40			1.0
844			60	40	1.0
845	60			40	1.0
848	60	40			1.0
851	60			40	1.0
852		40	60		1.0
854		40	60		1.0
855	60			40	1.0
856		40	60		1.0
857	40		60		1.0
872		20		80	0.995493
883		85	14		0.993533
884	85	14			0.993533
886		85	14		0.993533
887			85	14	0.993533
888		14	85		0.993533
925		85		14	0.993533
938			12	87	0.992554
939			87	12	0.992554
942	87			12	0.992554
943		87	12		0.992554
948	87			12	0.992554
952		12		87	0.992554
953			87	12	0.992554
957	12		87		0.992554
958		12	87		0.992554
959	87			12	0.992554
976		90	10		0.90298
980	10	90			0.90298
982		10	90		0.90298
983			90	10	0.90298
986	90		10		0.90298
987	90	10			0.90298
992		10	90		0.90298
994		10	90		0.90298
995			90	10	0.90298
997	10	90			0.90298
1006		14		85	1.0
1008		85		14	1.0
1009	85	14			1.0
1011			85	14	1.0
1013	14		85		1.0
1014	85	14			1.0
1016	85			14	1.0
1019		85	14		1.0
1023		85		14	1.0
1025	14			85	1.0
1339	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain