SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene18051

Length: 1186 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene18051

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25533	15/36
SustainPine v2.0	sp_v2.0_unigene26170	2/36
SustainPine v2.0	sp_v2.0_unigene32292	19/36

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-binding protein RBP37 [Oryza sativa Japonica Group]	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	95%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG9

Fln msg: your sequence is shorter than subject: 192 - 288

Fln protein: RRDLGCHSYVSDIDQQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRNPRSLMH*

Protein Length: 193

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAACTTGCAGCTCTTTTTATTAATTGTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCCTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGGACCATGTTGGGATACTATCCCGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCAGTAAACCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGCACAAATATTGACAAGAAGGTTTCCCAAGCGGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGAGGTTTCTCGTTTGAGACTCTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGAGAGTGCTATTGCTGCTTTAAACTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCGAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGA___ACGTGGCTATTTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATCGGAGAGTAAAACCTAGCTTTTGGTTTTAAAGTGGATGTCCATCAGGATGGCAGTATCATTTGATTATTGTACAATAAACATGAAAGTATCTATTGGGTCAGGCAATACAGTTCCTTTCAGAAACTCCTGGCATATTCTACGGGCATCATATTTATCTGCATACACCGTACAGAGTTCTTTGAAACTTTGAGTATGTTAGCTGCTTAGAAAGTAGCACGGCAGTTGCAGATGAAATCCTTGATTTGTCAACGAACAGTGCGTATTTCTTTTGGTAGGAATTTGACTCGCTGTGTCAATTTTAGAAAGCAAGGATGACATCATTTTGTTCCTGTAGATTTGGCTGTAAAAATTGGTTGCTCATCCACTTGTGATTTAAGTACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGATTTCCATCCTGTAAGCCCTAAGGCTTTACTATTGATCCAATAATGAACTAGCCTGATGACGACTTGACAATCTGTCATGTTAGGAAATTCTTCAAAGGCTT

Fln Alignment:

Contig18051___YVSDIDQQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRNPRSLMH
A9NNG9________________YVCDIDHQVTEEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPHPTMH

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
144		66	33		0.997452
146		33		33	0.997753
147		33		66	0.997452
148			33	66	1.0
150		33	33	33	0.997753
151	33		66		1.0
154	33			33	0.997753
161	66	33			0.997452
162	66			33	0.997452
163			33	66	0.997452
165		33		66	0.997452
169	33		66		0.997452
212		14		85	0.993533
215		14		85	0.993533
217			85	14	0.993533
221	85	14			0.993533
224	85			14	0.993533
225			14	85	0.993533
226		85	14		0.993533
228		85		14	0.993533
231		14	85		0.993533
233			85	14	0.993533
234		14	85		0.993533
235	14		85		0.993533
388		20		80	0.995493
391		20	80		0.995493
396		20	80		0.995493
397		20	80		0.995493
400			20	80	0.995493
406		20		80	0.995493
407	20			80	0.995493
408		20	80		0.995493
409	80			20	0.995493
410		20	80		0.995493
540	16		83		0.994512
553	83			16	0.994512
554			83	16	0.994512
555	83	16			0.994512
556		83	16		0.994512
696	66	33			0.997452
699		33	66		0.997452
704	33			66	0.997452
707	66			33	0.997452
710	66			33	0.997452
712			66	33	0.997452
713	66	33			0.997452
714	33			66	0.997452
715		33	66		0.997452
716	33		33	33	0.997753
721	66			33	0.997452
734		12		87	0.999964
742	86		13		0.999973
744	86	13			0.999973
781		10		89	0.999919
782			10	89	0.999919
787	89			10	0.999919
788	89		10		0.999919
793		89		10	0.999919
800	89		10		0.999919
802	10			89	0.999919
817		36		63	1.0
830	92		7		0.999664
831		92		7	0.999664
837	88	7		3	0.999079
838			92	8	0.999718
839	88	4	8		0.999262
841		8		92	0.999718
844	8			92	0.999718
845		8		92	0.999718
855	48		52		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain