SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17947

Length: 699 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17947

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5235	33/43
SustainPine v2.0	sp_v2.0_unigene33843	8/43
SustainPine v2.0	sp_v2.0_unigene79164	2/43

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_001078119.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAF20226.1\|AC012395_13 putative RING zinc finger protein [Arabidopsis thaliana] gb\|AEE74513.1\| RING/U-box domain	-	-	1.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	ubiquitin-protein ligase zinc ion binding protein	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
90	25			75	0.996473
92			75	25	0.996473
95	75			25	0.996473
97		75	25		0.996473
98		25		75	0.996473
99	25			75	0.996473
101	25		75		0.996473
102	25	75			0.996473
103	25			75	0.996473
107	75			25	0.996473
112		25		25	0.995533
114	75			25	0.996473
116			25	75	0.996473
117	75			25	0.996473
118	75		25		0.996473
119	25			75	0.996473
120	75	25			0.996473
121		25		75	0.996473
123		75		25	0.996473
124	75		25		0.996473
125		75	25		0.996473
128	42		14	42	1.0
129	42	42		14	1.0
130		14	42	42	1.0
131	14	42		42	1.0
132		14	42	42	1.0
133	42			57	1.0
139	11	55	33		1.0
140		88	11		0.923564
142	11		88		0.923564
143			55	44	1.0
144		88	11		0.923564
147			55	33	1.0
150	88			11	0.923564
153		16	8	75	0.99999
157	66	8		16	0.999991
158			16	83	0.999991
162		25		75	1.0
165	83		16		0.999991
166			16	83	0.999991
168			83	16	0.999991
169		9	90		0.999842
170			90	9	0.999842
171		9		90	0.999842
172	9	9	81		0.999363
173		90	9		0.999842
282	3		11	84	1.0
417	12			87	0.992554
478	85			14	0.993533
484			14	85	0.993533
606			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain