SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17883

Length: 769 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17883

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7579	13/17
SustainPine v2.0	sp_v2.0_unigene61278	1/17
SustainPine v2.0	sp_v2.0_unigene71680	2/17

Source	Descriptions	Term	Type	Identity
AutoFact	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] gb\|AAF02143.1\|AC009853_3 putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] dbj\|BAC42699.1\| putative beta-1,3-glucanase precursor [Arabidopsis thaliana] gb\|AAO64098.1\| putative g	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	o-glycosyl hydrolases family 17 protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	cation binding	GO:0043169	Molecular Function	73%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
24	40		60		1.0
26		80		20	0.995493
27			60	20	0.99255
28		20		80	0.995493
29			60	20	0.99255
30	60			40	1.0
38		40		60	1.0
43		60		40	1.0
44			40	60	1.0
47	40			60	1.0
86			16	83	0.994512
89		83	16		0.994512
91		16		83	0.994512
93		83		16	0.994512
94	83			16	0.994512
96		83	16		0.994512
98	83			16	0.994512
100			83	16	0.994512
101		16	83		0.994512
103	83	16			0.994512
104			83	16	0.994512
232		83		16	0.999991
236		16		83	0.999991
242	83	16			0.999991
243	83			16	0.999991
302	88		11		0.923564
314			11	88	0.923564
317	88		11		0.923564
318	88			11	0.923564
319	88	11			0.923564
323	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain