SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17879

Length: 877 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17879

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15735	125/132
SustainPine v2.0	sp_v2.0_unigene18596	1/132

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AAD24639.1\| putative receptor-like protein kinase [Arabidopsis thaliana] gb\|ACN59305.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEC09269.1\| leucin	-	-	54%
FL-Next	tr=Histone 3; Picea abies (Norway spruce) (Picea excelsa).	-	-	100%
Blast2go	probable leucine-rich repeat receptor-like protein kinase at1g68400-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
31		2	97		0.967822
34		28	72		1.0
37			2	97	0.967822
39	97	2			0.967822
47	2			97	0.964186
51	27			72	1.0
227	1	74			1.0
399		29		66	1.0
423			6	80	0.999961
424			73	26	1.0
425	73			26	1.0
426		26	73		1.0
461		10		90	0.90298
463		10		90	0.90298
467	11	88			0.923564
468		11		88	0.923564
469	75	12		12	0.975346
470		12		87	0.992554
471			12	87	0.992554
472		62	12	25	1.0
473	40		60		1.0
474		40		60	1.0
475			40	60	1.0
476	40	40	20		1.0
477	40			60	1.0
478	40	20	40		1.0
479	83	16			0.994512
480		16	83		0.994512
481	33			16	1.0
482		16	66	16	0.988813
483		16	83		0.994512
485	16			83	0.994512
486			16	83	0.994512
490	83			16	0.994512
491			16	83	0.994512
492			16	83	0.994512
493	83	16			0.994512
497		83		16	0.994512
500	83	16			0.994512
501			83	16	0.994512
502		16	83		0.994512
507	83			16	0.994512
534	85	14			1.0
535	85	2	2	9	1.0
536			85	14	1.0
540		90	9		1.0
542	90	4	2	2	0.960255
543	90	4	2	2	0.960255
549	4	95			0.997494
550	95			4	0.997494
575	34		65		1.0
751	37		62		1.0
765			39	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain