SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17859

Length: 1120 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17859

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15832	6/89
SustainPine v2.0	sp_v2.0_unigene16362	61/89
SustainPine v2.0	sp_v2.0_unigene60910	9/89

Source	Descriptions	Term	Type	Identity
AutoFact	Non-symbiotic hemoglobin, putative n=1 Tax=Ricinus communis RepID=B9RZD8_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	non-symbiotic hemoglobin class 1	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Globin, subset	IPR000971	-	-
Sma3	Leghaemoglobin	IPR001032	-	-
Sma3	Globin, structural domain	IPR012292	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LND3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 194 - 250

Fln protein: VVTLAVTQ*CYENLPSD*QVVTGAVV*SVGRCVTLVRARAFTEEQEALVKKSWNAMKSNAAELGFRFFLRVFEIAPSAKRLFSFLHDSDVPIEKNAKLKAHALTVFKMTCESAIQLREKGTATFSESNVKDLGKLHFKYGVVDEHFDVVKFCLLETIKDAVPDMWSLEMKTAWDEAYTQLAEAIKSEMKTVQP*

Protein Length: 195

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGATGTTACGAAAATCTCCCTTCAGATTGACAAGTAGTAACTGGAGCCGTGGTATAGTCCGTCGGACGTTGTGTGACACTTGTCCGCGCGAGGGCTTTTACAGAGGAGCAAGAAGCCCTAGTTAAGAAATCATGGAATGCCATGAAATCAAATGCTGCCGAACTGGGGTTTAGGTTCTTTCTAAGAGTGTTTGAGATTGCGCCTTCAGCCAAACGGCTATTCTCGTTTTTACATGATAGTGACGTCCCAATCGAAAAGAATGCAAAGCTTAAGGCACATGCTCTCACAGTTTTCAAAATGACTTGTGAATCTGCCATTCAACTACGAGAGAAAGGAACGGCAACATTCTCAGAATCAAACGTCAAGGACTTGGGGAAGCTTCATTTTAAATATGGAGTAGTTGATGAACATTTTGATGTTGTTAAATTCTGCTTGCTCGAGACTATTAAGGATGCTGTTCCGGACATGTGGTCTCTAGAAATGAAAACTGCCTGGGATGAAGCCTATACCCAATTGGCTGAAGCTATCAAAAGCGAAATGAAGACTGTGCAACCATGA___GTGCCCTGATTTTGTTGCTGAGTATTGACAAAGTCTTGGCAACTAATCCCTCGGCGGTATTTAAGATATTGGATTATGACGTTTCAAGAGATGATAAAAGTCTATTTCTTGATAACCTGAAGAACTTGTGGAAAGATATTATTAGTTGTTCATAACCAGTAATAGACCTCAATGTCTGAAGATGGTTGTCACTGAGATTTATGAGAAGTAATTAAGAACCCACATAACCATAATTGGCTCCTATCAGCTATACATAACGCCCTCGGTCATTGTTTTAAGATTCCTTCGTAGATTTTACACCTGTTATAGAGTCCTGAAAGTAAGGAGGTACCTTTGCGCCCAGATTTCCATAAATTGCATCAGATTCAATTTTTGGGTAAAACCCCTGTAGATTGTAAAGAGCTTTACTCACATAGGTTGGGTTAATAATCTTATTGTCCTTAATTACAGTTCTTTGAACAATCATGTCACGGAATATTGGGCTGGTAATGCTATTGTTCTTAGTTATTTGAACTATTTTCCATCATATGAATTTAT

Fln Alignment:

Contig17859___TLVRARAFTEEQEALVKKSWNAMKSNAAELGFRFFLRVFEIAPSAKRLFSFLHDSDVPIEKNAKLKAHALTVFKMTCESAIQLREKGTATFSESNVKDLGKLHFKYGVVDEHFDVVKFCLLETIKDAVPDMWSLEMKTAWDEAYTQLAEAIKSEMKTV
B8LND3________________TNVQTRAFSEEQEALVKKSWNAMKPNAPQLGFKFFLRVFEIAPSAKRLFSFLQDSDVPIEKNPKLKAHGLIVFKMTCESAVQLREKGTVTFSESNAKDMGKLHLTYGVLDEHFDVVKFCLLETIKDAVPDIWSPEMKIAWDEAYTQLAEAIKSEMKTV

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
544	50	50			1.0
589	70		20	10	0.999998
592	70	30			1.0
598		75		25	1.0
601	62	12	25		1.0
602		37		62	1.0
604			15	85	1.0
606		15	84		1.0
607	10	5	5	78	0.999769
609	5		77		1.0
620	82		17		1.0
630		70	29		1.0
644		87		12	0.999964
646			81	18	1.0
647	18	81			1.0
656	87			12	0.999964
658	87			12	0.999964
665	80	20			1.0
684		20		80	1.0
689	66			33	1.0
709		89	10		1.0
711		10	89		1.0
712	89		10		1.0
713	89			10	1.0
716	66	33			1.0
720	35	4	56		1.0
722		6	91	2	0.999993
723		4	95		0.995055
724	93			2	0.973796
725	83	16			1.0
726	91			8	1.0
727		6	93		0.999998
728	93			2	0.973796
731		4		95	0.995055
732	4			95	0.995055
733	93	4	2		0.973796
735		4		95	0.995055
736	93	6			0.999998
748		93		6	0.999998
758	95			4	0.995482
762		80	19		1.0
763	95	4			0.995482
777	42		57		1.0
784		54		45	1.0
786		11	88		1.0
791		10		90	1.0
803	92			7	1.0
814	60			39	1.0
815	7	92			1.0
867		36		63	1.0
874		6		93	0.999998
901		4	95		0.996599
903			95	4	0.996599
912	34		65		1.0
920	4		95		0.997494
924	5	95			0.997749
941		67		32	1.0
954	69	30			1.0
955	30		69		1.0
1009	18		81		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain