SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17841

Length: 1598 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17841

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9084	3/86
SustainPine v2.0	sp_v2.0_unigene18617	79/86

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	88%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain	IPR002687	-	-
Sma3	Tumour necrosis factor	IPR006052	-	-
Sma3	NOP5, N-terminal	IPR012974	-	-
Sma3	NOSIC	IPR012976	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV25

Fln msg:

Fln protein: MLEALQILQNVQHQLFRFLVLRKLSSGHLKHVETPQNMVLFFILLLLGGPLLEIKVVYHVTWQINVP*

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAACACCTTTTGCATGAGCGTGTGAGCTTGGTTTTCGTTGCATTTTCCTGAGCTGGTTAAGATTATTAATGACAACTATATGTATGCACGAGTTGCAAAGTTTGTGAAGGATAAGTCCACGTTATCAGATGATGCATTACCTGAATTAGTAGAAATAACTGGAGATGAAGACAAAGCCAAGGATATCATAGAAGCTGCAAAGTCTTCCATGGGTCAAGACATATCTCCAGTTGATTTAATAAATATTGAGCTGTTTGCACAGAGGGTTATAGAACTTTCTGAGTATCGGAAGCAGCTCCATTCTTATCTTGTGTCAAAGATGCAAGATATTGCTCCAAATCTTGCAAGTTTGATTGGTGAAATGGTGGGTGCTCGGTTGATATCTC_-_ATGCTGGAAGCCTTACAAATCTTGCAAAATGTCCAGCATCAACTCTTCAGATTCTTGGTGCTGAGAAAGCTCTCTTCAGGGCACTTAAAACACGTGGAAACACCCCAAAATATGGTCTTATTTTTCATTCTTCTTTTATTGGGAGGGCCTCTACTCGAAATAAAGGTCGTATATCACGTTACCTGGCAAATAAATGTTCCATAG___CTTCTCGAATTGATTGTTTCTCTGAGGTGAATACAAATATATTTGGTGAGAAACTTCGAGAGCAGGTTGAGGAAAGGTTAGAATTCTATGACAAGGGCATCGCCCCTCGTAAGAACCTTGATGTTATGAAAGAGGCTATTCAAAATTCTGGGAAGGAAAATGGTGACATGCCTAAACTTGACAGTGAAAAGAAGAAGAAGAAGAAGAAAACAGAGCAAATGGAAGTTGATCTGTTGAAGCAAGCACCCGAAGCAGAGGAATTTGCTGGATCGGAGAAGAAAAGAAAGAAAGAAAAGAAACGTCTTAGAGAGGACATTGATGCTAGTGAAGAAAATGGTGTTACTGAGGAAGCGCTGGTACGCATTCTCCAGAGAAAAAGAAGAAAAAGAAAAAGAAAGTTGTAGATGATACGGACAGTGTCTTGGAAAAAGAAACTGCTATAAATGGGCTAGGTACTGTTGAAGGTGAGACAAAGAAGAAGAAAAAGAAGAAGACAAAGGTGAATGCAGACACTGATTAGAGTAGACTTTTTAAGGTTAATGTGTGCGGATGTCACAGTGATAGTACTTTGTATGATTCCAACCTAGATCATAGCAGTGTGCATTCTGCTAGTTCAGGAAGCCCGAAGAATTGATCCGAAGGGCTTGTTGGGGAATTTCAATTTTGTAGTTTAAGAGGAATTTTTTTAATGTGAACGTTCCATTTCTCTTGAATTTAAACCTTTTGTGATGCTTTGGGTGAGATCAAGCTGGAATTTTAGTTAGTGAGAGTATTTTCCACTTGCAAGTATTTTATATTAATCCAAGTGTTATGAATTTTTCCTGTTTAAGGTTTCCAATGTTCTGTTTATGTAATGCACCTTATGGTAGTGTCATTTTCTCTCAATCACTCGCGAGTCAGTAATGATTGGCCAGAGATTTTAAACTTCCATTCGAGAAATATGCCGAAGGTTTACTATTTTTATTCTGTACACAGTTGCCTG

Fln Alignment:

Contig17841___MLEALQILQNVQHQLFRFLVLRKLSSGHLKHVETPQNMVXXXXXXXXXXXXXEIKVVYHVTWQINV
A9NV25________________MLGALQTLQNVQRQPFRFWVLRRLFSGLLKHVETHQSMVLFFIHLLLGELLLEIRGVYLVTWLTNV

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
396	40		60		1.0
405	40		60		1.0
411	75	25			0.996473
414	25			75	0.996473
423	75		25		0.996473
435		14		85	0.993533
471			14	85	0.993533
472		12	87		0.992554
475		12	87		0.992554
476		87	12		0.992554
480		12	87		0.992554
481	87	12			0.992554
482	87			12	0.992554
483	75		12	12	0.975346
486			14	85	0.993533
490			14	85	0.993533
494		14	85		0.993533
495			85	14	0.993533
496		14	85		0.993533
497	14	85			0.993533
498	85			14	0.993533
532	25		75		1.0
533		25		75	1.0
537	75		25		1.0
538		8	25	66	1.0
539		25		75	1.0
541			33	66	1.0
545		8	8	66	0.999991
548	8			75	0.99999
552	7	14	7	71	0.999974
960		25	66	8	1.0
961			33	66	1.0
963	66	33			1.0
964		66	33		1.0
968		33	66		1.0
969		33	66		1.0
970	66			33	1.0
971	66			33	1.0
978			66	33	1.0
979		33		66	1.0
982			55	44	1.0
997	90	10			0.90298
998	90		10		0.90298
999	90			10	0.90298
1000		10	90		0.90298
1001	90		10		0.90298
1002	90			10	0.90298
1005	90	10			0.90298
1006	90	10			0.90298
1007	90			10	0.90298
1008	90			10	0.90298
1010	90			10	0.90298
1011	90		10		0.90298
1012	90			10	0.90298
1013	90	10			0.90298
1015		10	90		0.90298
1017	90	10			0.90298

SSRs (tot: 3)

Start position	End position	Sequence	Length
805	824	AAG AAG AAG AAG AAG AAG AA	20
896	910	AAAG AAAG AAAG AAA	15
996	1013	AAGAAA AAGAAA AAGAAA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain