SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17798

Length: 628 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17798

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17238	10/12
SustainPine v2.0	sp_v2.0_unigene21531	1/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L23 family protein n=1 Tax=Solanum tuberosum RepID=Q38HS8_SOLTU	-	-	9.99995e-41	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-sugar transporter	IPR007271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Ribosomal protein L25/L23	IPR013025	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
32	42		14	42	1.0
36	42	57			1.0
37		14	42	42	1.0
38		57	42		1.0
39	42			57	1.0
40		42	57		1.0
41	85		14		0.993533
42	42	57			1.0
43	50			50	1.0
44		37	62		1.0
45	87			12	0.992554
46		62	37		1.0
47		12	75	12	0.975346
49		12		87	0.992554
50	12			87	0.992554
250	90	10			0.90298
252	88	11			0.923564
254			90	10	0.90298
256	10			90	0.90298
257		10	90		0.90298
260			90	10	0.90298
262	90		10		0.90298
263		10	90		0.90298
265		90	10		0.90298
268	10			90	0.90298
269	90	10			0.90298
271	90	10			0.90298
272	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain