SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17793

Length: 1038 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17793

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4611	26/27

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein	-	-	51%
FL-Next	sp=F-box/LRR-repeat protein At1g67190; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	f-box lrr-repeat protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
313	85	14			0.993533
314	85		14		0.993533
316		12		87	0.992554
317			12	87	0.992554
319			12	87	0.992554
320	14			71	0.984337
326	85		14		0.993533
327			14	85	0.993533
328	85	14			0.993533
330			14	85	0.993533
333		14		85	0.993533
335		14	85		0.993533
337		85		14	0.993533
423			71	28	1.0
427	87	12			0.992554
430		12		87	0.992554
436	87	12			0.992554
438	87			12	0.992554
443	85	14			0.993533
444	12		87		0.992554
447		12	87		0.992554
461		18	81		0.999994
488	83	16			0.999991
492			16	83	0.999991
493	16			83	0.999991
498	81	18			0.999994
501	81			18	0.999994
502		18	81		0.999994
697		87		12	0.992554
699			12	87	0.992554
837	53		46		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain