SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17787

Length: 895 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17787

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6808	35/36

Source	Descriptions	Term	Type	Identity
AutoFact	Pre-mRNA-splicing factor cwc24, putative n=1 Tax=Ricinus communis RepID=B9RK06_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	pre-mrna-splicing factor	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	84%
Blast2go	N-acetyltransferase activity	GO:0008080	Molecular Function	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	GNAT domain	IPR000182	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
347	75		25		1.0
348	75			25	1.0
349		25	75		1.0
350		75	25		1.0
352		75	25		1.0
353	25		75		1.0
359			25	75	1.0
360	75		25		1.0
362	75			25	1.0
365		25	75		1.0
391		11		88	0.923564
394		88	11		0.923564
395	11		88		0.923564
396		11		88	0.923564
399		88		11	0.923564
400			88	11	0.923564
403	88	11			0.923564
404	88			11	0.923564
406	88			11	0.923564
407	88	11			0.923564
409		11	88		0.923564
410	87			12	0.992554
411		12	87		0.992554
412	12		87		0.992554
414		37		62	1.0
423	37			62	1.0
460		12		87	0.992554
461	87		12		0.992554
462		87		12	0.992554
465	87			12	0.992554
467	12		87		0.992554
468		12	87		0.992554
475	87	12			0.992554
477	87		12		0.992554
478			87	12	0.992554
479		12	87		0.992554
483	12		87		0.992554
518	88		11		0.923564
519	88			11	0.923564
522		11		88	0.923564
525			88	11	0.923564
526	88		11		0.923564
529	87		12		0.999964
647	10	90			0.90298
703	50			50	1.0
725		40		60	1.0
727			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain