SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17784

Length: 250 nt

UniGene Fasta

>uagpf_v2_unigene17784
CGTCGTGACCTTGGCTGTCACTCAAGTTTCAAGCCCTGTTCATGCGTCGGACCTTGGCTGTCAGTCTGTTTATGTTCGCCGCCAAAAGAGAAACAGTCCAGATAATGGAAGAGTTTCAAGCCCTGTTCATGAACCGGACCGCAGTCGATCGCCAGTGAGGCACTCACGGCACAGTACTGATCATGGCAGGTCTGCAAGTCCTGTTTATGCTCATCGCCCAAAGAGGAACAGTCCAAGATAACGGAAGAGT

Ace file of the UniGene uagpf_v2_unigene17784

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20873	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	arginine serine-rich-splicing factor rsp41	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	67%
Blast2go	nuclear speck	GO:0016607	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAG6

Fln msg: STOP codon was not found. Distance to subject end: 1 aas,

Fln protein: MRRTLAVSLFMFAAKRETVQIMEEFQALFMNRTAVDRQ*GTHGTVLIMAGLQVLFMLIAQRGTVQDNGR

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTCAAGCCCTGTTC_-_ATGCGTCGGACCTTGGCTGTCAGTCTGTTTATGTTCGCCGCCAAAAGAGAAACAGTCCAGATAATGGAAGAGTTTCAAGCCCTGTTCATGAACCGGACCGCAGTCGATCGCCAGTGAGGCACTCACGGCACAGTACTGATCATGGCAGGTCTGCAAGTCCTGTTTATGCTCATCGCCCAAAGAGGAACAGTCCAAGATAACGGAAGAGT

Fln Alignment:

Contig17784___KFQALFMRRTLAVS------------LFMFAAKRETVQIMEEFQALFMNRTAVDRQ*GTHG
D5AAG6________________ELQALFMNGTAGIERGAVLIMEGLQVLFILTAQRGTVQIMEELQALFMNGTAVDHQCGTQG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
139		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain