SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17736

Length: 781 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17736

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18339	9/10
SustainPine v2.0	sp_v2.0_unigene26788	1/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	small subunit ribosomal protein S6 [Arabidopsis thaliana] dbj\|BAB01802.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM67031.1\| unknown [Arabidopsis thaliana] dbj\|BAC42712.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50729.1\| unknown protein [A	-	-	8.0e-28	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	small subunit ribosomal protein s6	-	-	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation elongation factor EF1B/ribosomal protein S6	IPR014717	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
405		25		75	0.996473
409	75	25			0.996473
410	75		25		0.996473
415	75	25			0.996473
417		75		25	0.996473
418	75		25		0.996473
420	75	25			0.996473
422			25	75	0.996473
423		75		25	0.996473
427		25	75		0.996473
428			75	25	0.996473
429		25	75		0.996473
439		16		83	0.994512
440	66		33		1.0
442	83	16			0.994512
443	66	16	16		0.988813
445	16		16		0.988813
447	83	16			0.994512
448		16	83		0.994512
451			16	83	0.994512
454	83			16	0.994512
455	83		16		0.994512
456	83			16	0.994512
459		16	83		0.994512
460			83	16	0.994512
461		16	83		0.994512
463			16	83	0.994512
494		14	85		0.993533
495	85		14		0.993533
497		14	85		0.993533
498	85		14		0.993533
499			85	14	0.993533
502	85	14			0.993533
503		14		85	0.993533
504	85			14	0.993533
505		85		14	0.993533
512			85	14	0.993533
513	85	14			0.993533
514	14		85		0.993533
515		14	85		0.993533
516	85			14	0.993533
517		14	85		0.993533
518	14			85	0.993533
655		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
479	492	GAT GAT GAT GAT GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain