SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17731

Length: 2362 nt

UniGene Fasta

>uagpf_v2_unigene17731
CGTCGTGACCTTGGCTGTCACTCAAACTTAATATCTAGAACCCTTTTTAAGAAATTGTGAGGCGGTATGCGGCAACAGCTACAGAAGCTTCACAACGATTTCGCTATGATCGGTACGTCATGACTATTATTCTGTGCGTCTTTATAACAGAGAAGAGCTTTCCCACAATTTAATATCGTTACACAATTCTAGAATCGTGAAGGAAGTCTGGTTTCTAGAAGGAATTTGTCAAATAGTGGATTTGACCAGTGAGGATATCAGAAAGTTCCTGTGAAATATATATATCACTGCTTCAATACCATTCATTATCTATTGCTATCATCGTCTGATACAATTAGTTTTAGTAGTCCGGATCTATTGCTTGCAGAGTAATTGCACAATTTCTCAGTGCTTGATCTCTTACATAGTTTTTGTTAAGAGTTTGTAATATCTGCAATGGCGGCGAGGATTGCAATCAAGCCATTAACAATAGGCCCTGGAGCTTTTTCCGATGAATTCACTATCAGTTCTCCTGCTCAGGTGAGGATTCAGGATTTACCACATTTAGGAGATTACTTAGAGGAGTTACCCAGTTTTCCTAATCCTCTGTTGCAGAACAAGTATATTCATCCTGGTGAAGGGTTTTTTGTCACTGAGAGCGATATGGTCATGGAGAATATAGCTGTGGAAACGCAGACATTAGGGAAAGAGATGCAGAGGCTTTATCACAGAGCTGGACCTAGGTCTAAGGTGTGTTTTAGCCCTGATGATGTCAGGGCTGCCATTATTACATGTGGGGGTTTATGTCCTGGGCTTAATACCGTTATCAGGGAGCTTGTAGATGGTCTCTGGTTTCAGTATGGGGTAAGGGATATCAAGGGAATTAAGTCGGGTTATCGCGGGTTTTATTCATCTGAACCTGTGGCTTTGAATCCTAAGTTGGTGCATAATTGGCACAAGAAAGGGGGGACAGTGCTGGAGAGCTCAAGAGGGGGCTTTGATCTGCACAAGATAGTTGATGCCATTGAAGCCCATGGTTTTAACCAGGTTTATATCATTGGTGGGGATGGAACCATGAGGGGAGCAGTTAATATATTTGAAGAGGTAAAGAGGAGGAAGCTTAGGGTCTCCATTGCTGGGGTTCCGAAGACTGTGGATAATGATTTGGGCATCATTGACCGGTCCTTTGGCTTCCAGACAGCAGTTGAGGCTTCACAGAATGCTGTCAATGCAGCCCATGTGGAGGCCAAGAGCGCAACCAATGGAGTCGGGGTGGTTAAGTTGATGGGCCGCAATGCAGGCCATATTGCACTGCATGCGACATTGAGTAGCAGGGATGTGGATTGTTGTCTTATACCTGAGATCTCATTTTATCTGGAGGGTGAAGGGGGTTTGTTTGAGTTCGTGGAGCAACGATTGGCAGAAAATGGACATTTTGTCCTTGTAGTTGCAGAGGGAGCTGGACAGGAGTTGATCCCTCGGAGTCCTGATGAAAAGGAGAAGAGAGATGAATCTGGTAATCCTGTGTTTTTGGATGTTGGGCCCTGGCTGTGCAGTGCGCTGAAACAGTGGTGGAAGAAACATCACCCCAATGAGTTGTTTACAGTGAAATATATTGACCCAACGTATATGGTCAGGGCTGTGCCAGCAAATGCTACAGATAATCTGTATTGTACTCTGCTTGCTCATTCTGCTATACATGGGGTCATGGCTGGCTATACTGGTTTTGTGTCAGGATTAATCAATGGAACTTATGCCTACATTCCTGTGAATCAGGTTGCTTCTGCTCAGCACTTTGTGAATGTCAGCGATCACAAATGGGCATGGATGAGGTCTGTGACTAATCAGCCAGACTTTTCCCGGATTACAAATTCCGGGAAGAAGGATTGATTTTCAGATTATTGTGGTGGTCAGGATGCTTCTCATAGTTGTTTAAAGGTAGACCTACAGCCCAATGTTTTAGATCAGATGCTATAGATTGGCTAATTAGTATTTATTTATGTTGAAATCCTCTGGAATTGGGATTCTTTGGTAGCTCCAATTGAATTTTCACTTTCGGCCTCTTTAGTTCATTTTGCCTGCTCTTTTTGAAGTTTCATTCCTGATTACCCTGCTTTGGAGGAAACCATGACAGTAAAATATTATGCCATGTAGAGAGGGGGAACCTATGTGACGGCCCTTTGGTTCTTTTGGTTATTTGGTTCCATGATGTATCGTTTCTTATAAACATTGATCTTGATTCATAGTGAATATGTGATAATTGCTCCTCCTGAAAGAAAATAATAGTCATTTGCATCTATTGAAGTTTTATTTCTTTTACTTAAGTTTTGAGGAAACCATAACAGTAAAATCATATAGTAGGTAGGGAGGGCGAACCTGTGTG

Ace file of the UniGene uagpf_v2_unigene17731

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23244	96/103
SustainPine v2.0	sp_v2.0_unigene79516	3/103

Source	Descriptions	Term	Type	Identity
AutoFact	6-phosphofructokinase 2 [Arabidopsis thaliana] sp\|Q9FIK0.1\|K6PF2_ARATH RecName: Full=6-phosphofructokinase 2; AltName: Full=Phosphofructokinase 2; AltName: Full=Phosphohexokinase 2 dbj\|BAB11328.1\| pyrophosphate-fructose-6-phosphate 1-phosphotransferase-li	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	6-phosphofructokinase 2-like	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	79%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT73

Fln msg: your sequence is longer than subject: 478 - 426

Fln protein: MAARIAIKPLTIGPGAFSDEFTISSPAQVRIQDLPHLGDYLEELPSFPNPLLQNKYIHPGEGFFVTESDMVMENIAVETQTLGKEMQRLYHRAGPRSKVCFSPDDVRAAIITCGGLCPGLNTVIRELVDGLWFQYGVRDIKGIKSGYRGFYSSEPVALNPKLVHNWHKKGGTVLESSRGGFDLHKIVDAIEAHGFNQVYIIGGDGTMRGAVNIFEEVKRRKLRVSIAGVPKTVDNDLGIIDRSFGFQTAVEASQNAVNAAHVEAKSATNGVGVVKLMGRNAGHIALHATLSSRDVDCCLIPEISFYLEGEGGLFEFVEQRLAENGHFVLVVAEGAGQELIPRSPDEKEKRDESGNPVFLDVGPWLCSALKQWWKKHHPNELFTVKYIDPTYMVRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGLINGTYAYIPVNQVASAQHFVNVSDHKWAWMRSVTNQPDFSRITNSGKKD*

Protein Length: 479

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTAATATCTAGAACCCTTTTTAAGAAATTGTGAGGCGGTATGCGGCAACAGCTACAGAAGCTTCACAACGATTTCGCTATGATCGGTACGTCATGACTATTATTCTGTGCGTCTTTATAACAGAGAAGAGCTTTCCCACAATTTAATATCGTTACACAATTCTAGAATCGTGAAGGAAGTCTGGTTTCTAGAAGGAATTTGTCAAATAGTGGATTTGACCAGTGAGGATATCAGAAAGTTCCTGTGAAATATATATATCACTGCTTCAATACCATTCATTATCTATTGCTATCATCGTCTGATACAATTAGTTTTAGTAGTCCGGATCTATTGCTTGCAGAGTAATTGCACAATTTCTCAGTGCTTGATCTCTTACATAGTTTTTGTTAAGAGTTTGTAATATCTGCA_-_ATGGCGGCGAGGATTGCAATCAAGCCATTAACAATAGGCCCTGGAGCTTTTTCCGATGAATTCACTATCAGTTCTCCTGCTCAGGTGAGGATTCAGGATTTACCACATTTAGGAGATTACTTAGAGGAGTTACCCAGTTTTCCTAATCCTCTGTTGCAGAACAAGTATATTCATCCTGGTGAAGGGTTTTTTGTCACTGAGAGCGATATGGTCATGGAGAATATAGCTGTGGAAACGCAGACATTAGGGAAAGAGATGCAGAGGCTTTATCACAGAGCTGGACCTAGGTCTAAGGTGTGTTTTAGCCCTGATGATGTCAGGGCTGCCATTATTACATGTGGGGGTTTATGTCCTGGGCTTAATACCGTTATCAGGGAGCTTGTAGATGGTCTCTGGTTTCAGTATGGGGTAAGGGATATCAAGGGAATTAAGTCGGGTTATCGCGGGTTTTATTCATCTGAACCTGTGGCTTTGAATCCTAAGTTGGTGCATAATTGGCACAAGAAAGGGGGGACAGTGCTGGAGAGCTCAAGAGGGGGCTTTGATCTGCACAAGATAGTTGATGCCATTGAAGCCCATGGTTTTAACCAGGTTTATATCATTGGTGGGGATGGAACCATGAGGGGAGCAGTTAATATATTTGAAGAGGTAAAGAGGAGGAAGCTTAGGGTCTCCATTGCTGGGGTTCCGAAGACTGTGGATAATGATTTGGGCATCATTGACCGGTCCTTTGGCTTCCAGACAGCAGTTGAGGCTTCACAGAATGCTGTCAATGCAGCCCATGTGGAGGCCAAGAGCGCAACCAATGGAGTCGGGGTGGTTAAGTTGATGGGCCGCAATGCAGGCCATATTGCACTGCATGCGACATTGAGTAGCAGGGATGTGGATTGTTGTCTTATACCTGAGATCTCATTTTATCTGGAGGGTGAAGGGGGTTTGTTTGAGTTCGTGGAGCAACGATTGGCAGAAAATGGACATTTTGTCCTTGTAGTTGCAGAGGGAGCTGGACAGGAGTTGATCCCTCGGAGTCCTGATGAAAAGGAGAAGAGAGATGAATCTGGTAATCCTGTGTTTTTGGATGTTGGGCCCTGGCTGTGCAGTGCGCTGAAACAGTGGTGGAAGAAACATCACCCCAATGAGTTGTTTACAGTGAAATATATTGACCCAACGTATATGGTCAGGGCTGTGCCAGCAAATGCTACAGATAATCTGTATTGTACTCTGCTTGCTCATTCTGCTATACATGGGGTCATGGCTGGCTATACTGGTTTTGTGTCAGGATTAATCAATGGAACTTATGCCTACATTCCTGTGAATCAGGTTGCTTCTGCTCAGCACTTTGTGAATGTCAGCGATCACAAATGGGCATGGATGAGGTCTGTGACTAATCAGCCAGACTTTTCCCGGATTACAAATTCCGGGAAGAAGGATTGA___TTTTCAGATTATTGTGGTGGTCAGGATGCTTCTCATAGTTGTTTAAAGGTAGACCTACAGCCCAATGTTTTAGATCAGATGCTATAGATTGGCTAATTAGTATTTATTTATGTTGAAATCCTCTGGAATTGGGATTCTTTGGTAGCTCCAATTGAATTTTCACTTTCGGCCTCTTTAGTTCATTTTGCCTGCTCTTTTTGAAGTTTCATTCCTGATTACCCTGCTTTGGAGGAAACCATGACAGTAAAATATTATGCCATGTAGAGAGGGGGAACCTATGTGACGGCCCTTTGGTTCTTTTGGTTATTTGGTTCCATGATGTATCGTTTCTTATAAACATTGATCTTGATTCATAGTGAATATGTGATAATTGCTCCTCCTGAAAGAAAATAATAGTCATTTGCATCTATTGAAGTTTTATTTCTTTTACTTAAGTTTTGAGGAAACCATAACAGTAAAATCATATAGTAGGTAGGGAGGGCGAACCTGTGTG

Fln Alignment:

Contig17731___LQNKYIHPGEGFFVTESDMVMENIAVETQTLGKEMQRLYHRAGPRSKVCFSPDDVRAAIITCGGLCPGLNTVIRELVDGLWFQYGVRDIKGIKSGYRGFYSSEPVALNPKLVHNWHKKGGTVLESSRGGFDLHKIVDAIEAHGFNQVYIIGGDGTMRGAVNIFEEVKRRKLRVSIAGVPKTVDNDLGIIDRSFGFQTAVEASQNAVNAAHVEAKSATNGVGVVKLMGRNAGHIALHATLSSRDVDCCLIPEISFYXXXXXXXXXXVEQRLAENGHFVLVVAEGAGQELIPRSPDEKEKRDESGNPVFLDVGPWLCSALKQWWKKHHPNELFTVKYIDPTYMVRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGLINGTYAYIPVNQVASAQHFVNVSDHKWAWMRSVTNQPDFSRITNSGKKD
C0PT73________________MYSDYFHPLEGFFVSENDMVMENIVVDIQTIKRETQVLYHRAGPRSEVCFNPDDVRAAIVTCGRLSPGVNTVVRELVIGLWSQCGVRDIRGIRSGYRGFYSSDPVALTPKLVDNWHRTGGTVLETSRGGFDLQKIVDGIEANGFNQVYIIGGDGTMKGAVKVFEEVKRRRLKVSIVGIPNSVDNDVGVIDRSFGFHTAVETAQSAINAAHVEAESAPNGVGLVRLMGRTTGHIALNSTLGSRDVDCCLIPENPFYLEGEGGLFEFLEHRLAENGHFVLVVAEGAGQELIPRRPEDKDKRDEYGNPVFLDVGPWLRDELKNWWKKHHPNEQFTLKYIDPTYMIRAVPGNAADNIYCTLLAHSAIHGVMAGYTGFAAGMINGVYAYIPLDRVAATQNFVDVNDHKWAWMTSVTNQPDFSCLAKSIKEE

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
80			33	66	0.997452
81	66			33	0.997452
83	66		33		0.997452
84			66	33	0.997452
85	66		33		0.997452
87		33	66		0.997452
91		66	33		0.997452
92	66		33		0.997452
94	66			33	0.997452
95	66		33		0.997452
96		66		33	0.997452
97		33	66		0.997452
100		33		66	0.997452
104	33	66			0.997452
277		33		66	1.0
278	66		33		1.0
280	66	33			1.0
281			33	66	1.0
282	66			33	1.0
283			33	66	1.0
285		33		66	1.0
287	66			33	1.0
288		66		33	1.0
290			50	50	1.0
291		50	50		1.0
292		66		33	1.0
293		7		69	1.0
295	30			69	1.0
297	61	30	7		1.0
298	46	15		38	1.0
300	53		30		1.0
301		69	30		1.0
302	15	84			0.999986
303	61			7	1.0
310	23			76	1.0
311	84	15			0.999986
312	15			84	0.999986
337	91	8			0.999807
363	47		52		1.0
405	54	45			1.0
614		85	5	10	0.999793
621	78	14			0.999974
622			75	16	0.99999
623		25	75		1.0
624	18	9	72		0.999994
625		14		85	0.999981
627			14	85	0.999981
629		14	7	78	0.999974
862		10	90		0.90298
864	90			10	0.90298
865	90	10			0.90298
866			11	88	0.923564
868	88		11		0.923564
870		11	88		0.923564
871		11		88	0.923564
872		88		11	0.923564
873			87	12	0.992554
876		12		87	0.992554
878	87		12		0.992554
881	12		87		0.992554
883			87	12	0.992554
884		12	87		0.992554
885	12		87		0.992554
889		10		90	0.90298
890	90		10		0.90298
891		10		90	0.90298
949	16		83		0.994512
951	16	16	66		0.988813
952	66	16	16		0.988813
954	83			16	0.994512
955			83	16	0.994512
956		16		83	0.994512
1373			85	14	0.993533
1661			11	88	0.923564
1662			88	11	0.923564
1664			11	88	0.923564
1668	12			87	0.992554
1670	87	12			0.992554
1674			12	87	0.992554
1678	87		12		0.992554
1683		12		87	0.992554
1684			87	12	0.992554
1685		12	87		0.992554
1686	12		87		0.992554
1845		10	90		0.90298
1846	90		10		0.90298
1848			10	90	0.90298
1852	81	18			0.999994
1858			81	18	0.999994
1861	81	18			0.999994
1865	81			18	0.999994
1866		18	81		0.999994
1867	18		81		0.999994
2030		9		90	0.999872
2033		90	9		0.999872
2234	12			87	0.992554
2282	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain