SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17679

Length: 616 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17679

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20825	1/16
SustainPine v2.0	sp_v2.0_unigene28299	13/16
SustainPine v2.0	sp_v2.0_unigene34670	2/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9R9Y4_RICCO	-	-	4.0e-34	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	serine esterase family protein	-	-	1.91193e-41	69%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8	IPR000630	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF676, lipase-like	IPR007751	-	-
Sma3	SGT1	IPR010770	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
83	33	66			0.997452
84	33		66		0.997452
85	33			66	0.997452
93		33		66	0.997452
94	33			66	0.997452
96	33		66		0.997452
97		66		33	0.997452
98	33			66	0.997452
99	33		66		0.997452
100	33			66	0.997452
103	33	66			0.997452
104		33		66	0.997452
106	66	33			0.997452
140		81	18		0.999994
142	81	18			0.999994
143		81	18		0.999994
144	81			18	0.999994
148		18	81		0.999994
151		81	18		0.999994
152		81	18		0.999994
153		18		81	0.999994
563	66	33			0.997452
564	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain