SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17611

Length: 472 nt

UniGene Fasta

>uagpf_v2_unigene17611
CGTCGTGACCTTGGCTGTCACTCAATGAATTATAGAGCAAGCAGTTGGTTGTTTTAACTGAACAACATTATTAGTCGTTGCTGCAGTTGTTGTTTTAACCGAACAACATTCTTAGTCGTTGTTGTGTTGAGATCTGTGCAATGGCACTTCGTCTGCTGTTTGTTTATCTTACTACGTTGCTCTTGCTCAGTCTGCTGTGGGAAAGCCAGGGTGTCAGTTCTATTGTGAGGACTGCTAATGGCCAATCCAACAGAGCAACTCTATATGGAAGCCAACAAGGCAGTCTCCAACCTGCAGAATGCTCACCGAGGTGCCAAGCAAGGTGCTCAGGGACAGCGTACAAGAAGCCGTGCTTGTTCTACTGTAACAAGTGCTGTGCAAAGTGTCTGTGTGTTCCTCCAGGAACATATGGGAACAAGCAGATGTGCCCCTGCTACAACAACTGGAAGACCAAGAGAGGAAGCCCAAAATG

Ace file of the UniGene uagpf_v2_unigene17611

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene79407	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein [Medicago truncatula]	-	-	4.0e-33	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	gibberellin induced protein	-	-	1.26117e-44	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP30

Fln msg: STOP codon was not found. Distance to subject end: 1 aas,

Fln protein: MALRLLFVYLTTLLLLSLLWESQGVSSIVRTANGQSNRATLYGSQQGSLQPAECSPRCQARCSGTAYKKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGSPK

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGAATTATAGAGCAAGCAGTTGGTTGTTTTAACTGAACAACATTATTAGTCGTTGCTGCAGTTGTTGTTTTAACCGAACAACATTCTTAGTCGTTGTTGTGTTGAGATCTGTGCA_-_ATGGCACTTCGTCTGCTGTTTGTTTATCTTACTACGTTGCTCTTGCTCAGTCTGCTGTGGGAAAGCCAGGGTGTCAGTTCTATTGTGAGGACTGCTAATGGCCAATCCAACAGAGCAACTCTATATGGAAGCCAACAAGGCAGTCTCCAACCTGCAGAATGCTCACCGAGGTGCCAAGCAAGGTGCTCAGGGACAGCGTACAAGAAGCCGTGCTTGTTCTACTGTAACAAGTGCTGTGCAAAGTGTCTGTGTGTTCCTCCAGGAACATATGGGAACAAGCAGATGTGCCCCTGCTACAACAACTGGAAGACCAAGAGAGGAAGCCCAAAATG

Fln Alignment:

Contig17611___ANGQSNRATLYGSQQGSLQPAECSPRCQARCSGTAYKKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGSPK
A9NP30________________SNGDTWMQQKRGRGSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain