SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17609

Length: 961 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17609

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene827	28/32

Source	Descriptions	Term	Type	Identity
AutoFact	Pantoate--beta-alanine ligase n=4 Tax=Oryza sativa RepID=PANC_ORYSJ	-	-	60%
FL-Next	sp=Pantoate--beta-alanine ligase; Oryza sativa subsp. japonica (Rice).	-	-	64%
Blast2go	pantoate-beta-alanine ligase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pantoate--beta-alanine ligase.	EC:6.3.2.1	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	beta-Alanine metabolism	00410	73%
Blast2go	Pantothenate and CoA biosynthesis	00770	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	pantothenate biosynthetic process	GO:0015940	Biological Process	73%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	pantoate-beta-alanine ligase activity	GO:0004592	Molecular Function	73%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	73%
Blast2go	cytosol	GO:0005829	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pantoate-beta-alanine ligase	IPR003721	-	0.0	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 101)

Position	A %	C %	G %	T %	Probability
71		33		66	0.997452
75		66	33		0.997452
76	66			33	0.997452
78	33		66		0.997452
85			33	66	0.997452
86			33	66	0.997452
94			66	33	0.997452
95	66	33			0.997452
96	33		66		0.997452
107	33	66			0.997452
110			66	33	0.997452
187		75	25		0.996473
189		25		75	0.996473
194		75	25		0.996473
200			75	25	0.996473
202	25			75	0.996473
204			75	25	0.996473
205	75	25			0.996473
206	25		75		0.996473
217		25		75	0.996473
232		50		50	1.0
235	11	88			0.923564
236		11		88	0.923564
240	88			11	0.923564
241	77	11	11		0.968132
242	77	11	11		0.968132
243		11		88	0.923564
246			11	88	0.923564
247	77	22			0.999999
248	88			11	0.923564
249		11	88		0.923564
250	77			22	0.999999
251		22	77		0.999999
253	88	11			0.923564
254		88		11	0.923564
256	11			88	0.923564
274		55		44	1.0
287	44	55			1.0
340	10		90		0.90298
352		60	40		1.0
385	57		42		1.0
394	42			57	1.0
422	12		87		0.992554
442	37		62		1.0
465			12	87	0.992554
466	87			12	0.992554
467		87	12		0.992554
474			12	87	0.992554
475	87		12		0.992554
476	87	12			0.992554
477	87			12	0.992554
479	87			12	0.992554
480		12	87		0.992554
482	87	12			0.992554
484	87	12			0.992554
485	12	87			0.992554
505		87		12	0.992554
514			20	80	0.999996
516		10	90		0.90298
517	10		90		0.90298
518		10		90	0.90298
519	10			90	0.90298
520		90		10	0.90298
521		10	90		0.90298
522			90	10	0.90298
523	80			20	0.999996
525			90	10	0.90298
526	90			10	0.90298
527		10	90		0.90298
529		22		77	0.999999
531		11	88		0.923564
532			88	11	0.923564
535	11		88		0.923564
596		20		80	0.999996
599			20	70	0.999998
600	80			20	0.999996
601		12	87		0.992554
602	87			12	0.992554
603	75	25			1.0
605			75	25	1.0
607			25	75	1.0
608		25		75	1.0
611		75	25		1.0
669	88		11		0.923564
672	88		11		0.923564
677	88	11			0.923564
678	88			11	0.923564
679			88	11	0.923564
680	88		11		0.923564
683	88			11	0.923564
684		88	11		0.923564
685			88	11	0.923564
687	11			88	0.923564
688		11		88	0.923564
690		11		88	0.923564
691	11		88		0.923564
701			26	73	1.0
708	46		53		1.0
769		69		30	1.0
841			25	75	1.0
906	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain