SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17578

Length: 684 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17578

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18807	16/17
SustainPine v2.0	sp_v2.0_unigene60893	1/17

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein L2 n=3 Tax=Pinus monticola RepID=D3IZ06_PINMO	-	-	78%
FL-Next	tr=Thaumatin-like protein L6; Pinus monticola (Western white pine) (Strobus monticola).	-	-	76%
Blast2go	thaumatin-like protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
5			87	12	0.992554
375	83	16			0.994512
381	66	33			0.997452
382	66			33	0.997452
383		66		33	0.997452
384	66		33		0.997452
385		66	33		0.997452
410		33		66	0.997452
414	66		33		0.997452
415	66			33	0.997452
417	33		66		0.997452
419		50		50	1.0
420	50		25	25	0.995533
422		25	75		0.996473
424	50	25			0.995533
425	50			50	1.0
427	25			75	0.996473
431	25	50	25		0.995533
434		75	25		0.996473
435	75			25	0.996473
436	75	25			0.996473
458	90	10			0.90298
459	90		10		0.90298
468	90			10	0.90298
470	90		10		0.90298
471	90	10			0.90298
473		90	10		0.90298
475	10		90		0.90298
476		10	90		0.90298
477	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain