SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17549

Length: 984 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17549

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16100	73/76

Source	Descriptions	Term	Type	Identity
AutoFact	Succinate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SLS5_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	succinate dehydrogenase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Fumarate reductase, C-terminal	IPR012285	-	-
Sma3	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	IPR004489	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
286		85		14	0.993533
288			85	14	0.993533
290	71		14		0.984337
297	85	14			0.993533
298		14	71	14	0.984337
300	14		85		0.993533
301	14	14		71	0.984337
302	85			14	0.993533
303			14	85	0.993533
306	14			85	0.993533
309		14	85		0.993533
310	14	85			0.993533
349		57		42	1.0
373			50	50	1.0
376			50	50	1.0
434	50		50		1.0
442	50		50		1.0
445	50		50		1.0
502		40		60	1.0
772			46	51	1.0
852		38		61	1.0
914	75			25	0.996473
915	25	75			0.996473
916		25		75	0.996473
918	75			25	0.996473
919	25			75	0.996473
949	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain